MmuINT0179683 @ mm9
Intron Retention
Gene
ENSMUSG00000051911 | Zfp664
Description
zinc finger protein 664 [Source:MGI Symbol;Acc:MGI:2442505]
Coordinates
chr5:125343075-125343878:+
Coord C1 exon
chr5:125343075-125343252
Coord A exon
chr5:125343253-125343723
Coord C2 exon
chr5:125343724-125343878
Length
471 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGT
5' ss Score
8.67
3' ss Seq
GTGTCGGGTTGTGTCTCCAGCAC
3' ss Score
6.49
Exon sequences
Seq C1 exon
CTCCCGGAGGCGTCTGGGTGTGCGGAGCGCGCGCGCGCGGCTCGGAGACGCACCTGTGAGGTGTCTCCCTCGGAAGGAGAGAGAGAGGGCGGCCCGGGGTGGGCGCGCGCGGAGTCCGAGGCCTGGACGCGCTCCTCGGCCACGCTCGGGAGGGAGTTGGAGCGGCCGACCGGAGTCG
Seq A exon
GTGCGTTTGAGTCTCTCGGCTTTTCAGGCCGGGGCGTGGGGCCGACTAGCGGGCTGGGGCTGGGGGAGCGGAAGGCGGGCTGGTAGAGTCCCGGGGGGAAGCGGGGGAGTCAGGAAAAGGAAAACAACCCATCCTTCAACCGGGCCTGGGCCGCGGGCATGGCGAGGAGGGAAGGGAAGGTCAGCGCGGTGCCCGCTGCGGCGCAGGGCCCGGGTCGGGCGCGGGATGAGGCAGAAGAGGCCCCGCGGGAGCTGGACTCTCCCGGACCGGGGCCCCATTGTTGTCCGGGGCCGAGGCGGGCGGGAGAGCGGCAGCTCTGGGAGCCGAGGGCCGCGCCCTGGAGCGCATCCAGGCGGGTCCCGAGAGAGCGGTAATGGCCGCGCGAGCGGGCCCCAGGGGCCGGGGGCGGGGGCGGCGGAGGGTCGTAGAGCGGTCCCGCTGCAGGGCTCTTGTGTCGGGTTGTGTCTCCAG
Seq C2 exon
CACTGCACGGTCCCCCGGCCGTGGCCGCTCAGCATCCCGCCCAGGTGATGAGGACCTCCCCGCGTCCCCAGCGCGCCAGGCTGCTGCTGTTGCTGCCGCTGCCGCCGGACGCCTCCATTGTCTGACCACCGCCAGGGCTCGGCTTTCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051911-Zfp664:NM_001081750:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=NA C2=0.585
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGCGTCTGGGTGTG
R:
CTGCCAGTGAAAGCCGAGC
Band lengths:
329-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: