MmuINT0179700 @ mm9
Intron Retention
Gene
ENSMUSG00000058291 | Zfp68
Description
zinc finger protein 68 [Source:MGI Symbol;Acc:MGI:1344427]
Coordinates
chr5:139053267-139058395:-
Coord C1 exon
chr5:139058283-139058395
Coord A exon
chr5:139053394-139058282
Coord C2 exon
chr5:139053267-139053393
Length
4889 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GAGAAATGTGTCATTTACAGGGG
3' ss Score
6.86
Exon sequences
Seq C1 exon
ATCCCTGCTGTCTGAATGGAGGACCACAGTAGGCCACGGGAGGAGGAGAATCAAGATGCTGCAGTTGACAGTCAGGTGACCCTCTGAAGCTCATCTGCCTCTTCAACCATCAG
Seq A exon
GTAAGTGCACATACCAAAAAGAGCCCACCTGATCCTAGCCTAAATTACTGACCAGCCCAATCATATTGTATTTAAAAAATTTTGAAGGGGCTTGTTACCTAGTGTAGATAATTATCACCCCCTACGATAGACAGGATTCCAAACTTTAATGACTCTTTGTTAATATTGGCAAAGCAGTAGGTACTTTATAGGTAGTGGTTTCCTCTAACTGAAAGATGAGTCACATGGAAAAAATGTAGACATGTATACGTAGGATTGGTGTTCAACTCACAGTACCTGTTAGGCTGGCTTTATTAATTTACGGGTTGGTGACTCTGCTGTTACTTAGGGCCCCAAAGGCAGCCCCTCCTGTACAATGGAAGGCACTGGGTTGAGGAATCAGGCAGATGAACAGTAGGGGGCAAGTTTTCCCAGTCTCGCTAGGGCCTTTTACTCTGAAGCTCGCCATCTTGGGATGCGTCCCTAGGCTCAGTCTCCTCTACTCTGGAGGTCTAGGTGGCTGTGCTGTAGACTCTGTTACCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCCATGTCCTGGAAGCCAGAAATGGTGAGTGTGTGGGTCAGTGTTTTGAACCAGGGTCTATAATTGGTGGGGATCATTTGTGGCTCTGGAGTCTACAGGTCAGAAGCCTGTACTGAGTCACTGGGCCCCAGGTCCCCTCTCTCTGTGGGGTGGGTGATGGGCTGGTAATTGGGACCCAGGTGGCCTGTCTCATTCCTGCAAGAGGACTTCAACTCCTGTTGGAACTCTTTGTGCCGTTAGTTCCCTACTGACCGTAGGGCAGCAGGTTGGGCCATCAATGGGCACAGGGTACATTCTGTTCTGTTCCAAATGATTAAAAAAAAAAAGTTTTTAAAGTATCATGACTTTAACATTTAGTACAAATGATACAACTTTAAAAAATTGTTTTACGATTTCATACGTATGCATAGTATACTTTGATTAATACCCTATTGTCCTTTTGTCATTGTCCCTTCTCACCGAATATTCCTTCCCAACAAGACCTTCTCTTTCTTGTTTGTTTGTTTTTGAATTATTTTTAATTTATATTTTATATATTTTTAATGGCCCACTGCATTTCAGTAGGGTTGCTAGCGTGAGTGTGGCTGGGGGATTATTGACTGCAAGGATACTTTAATCAGAGGCAATACTAAGGAATATTAAACACTTACATTCTGCTCATACTTCGTAAGGAATGGTGGAGCCTTATGAGACCCTCCCCTACCCATGATGGATTGCACTGGGTCCCCTCTTGTGTAGGTGGCCACTGTCAGCCTCTTTTTCCCAAGGCTACATGGCCTACTTGTTGGTGTACTTTTGGCCTTTGGCCTCCTTCCACTCTGTGTTGCTTGAGCTGAGGCCACTGGCCATCTTGGCTTCTCACTGCCCTGTCTATCTCTCTCACTGCCCTGTCTGTCTGTTTCACTGCCCTGTCTGTCTATCTCACTGCCCTGCCTATCTCTCTCACCTCTCTGTCTGTCTCACTGCCCTGCCTGTGTATCTCACTGCCCTGTCTGTGTATCTCACTGCCCTGTCTGTCTACCTCACTGCCCTGTCTGTCTATCTCACTGCCCTGTCTGTCTATCTCACTGCATTTTCAACTTCAAGTCTCCTCTTTTCCCAGGATTCTTCTCCTCTGTTCAGAATAAAGTCTGTCTTTTGTTGCCATGATCTTCTCGCTCTTCGGTCACCTCTAGACAACTTCTGTTCCTCAGCCTGACCCAAGAAGTTCCCATTTTCAATCAATTTTAACTTTCTTTTTTACTTGATGTCTTTTTCATTGTAGGACTTAAAGAATTGTGTCAAACTTGGAACTTCACACATCTTAGCTCACTGCTATGAACTCCCCACCCCACCCCCGCCCCGAACTAGAGGTGGCAGCTTTTAATTTATTTTAAAGCATAAAAGATAGGAACATAGCTAGGTTTTAGTCCTGCATGTCCTCAGATGTCTACTGGCTCCTTGTTCCTCGTTACCCACTATACACTGGCACGCTTACACTGTCTAGTCATAACTGTGGATACTTTTGCTAAATGTAATGGCCACTACCTGAGATATACTGCTGTCATTTTTGTTTTAAGTCCCTATGGTAAGCACAGGGCATGCTATGCAGCACTTATATTATGTCACACCGCTTAGTAGGGCTGAAGTGCCATTCTTATTTGTAATGTTTGTTGAGTTTTAATTAGCATTTAGGACAGTGTATAACAGCATCCTTACACTGTTTGTTATTTCAGATGATTTTCACTATGATGATTAATTTTCCAATAAGATCAGAAGCAATTTTTTTTTCTCATACTAATCTGTCATCAGGAGCATAGAGCATTTACTTCTCCGACTCATAGTACCAGAGAAAAAAACATTTTTTCCCTCTGTGTAGTACATTCTCAAATCTCATGACACAGGGAAAATGTGAACGTGTGGATGATACTCCTGACTTCTGCTTAGAAGACTGTACATCACTTGCATTCACAGTGCAGAGGGAGCCCAGATAGCAAAGGCAGACTTCAGGTTGGCTCATGTGAATGTTGGGATCCTTCGGTATTTTTCTCTGGTAAAGCCATGATAAATCAGAGCTATGATAGTTGAAGTGTTGCCCTTTTTCCCATAACCTCTCTATTGAAGCCTATATCCAAATCCACATGCCAACTGTATGTGAAGATAGGGCTTATAGCAAGTATTTAGTATTAAATAAGGAAATATGTGTGGGGTGCTAACACTGTATGGTTGTACTTCCCTCATCCAAAAGAGGAGGAAAAGCCGGGTGCTAGCACAGTGTAAGAGCGTTTATCTGTCATGCCCAAAGCTACAATTTGAACCTTAGAATTGAAGACATGAAAATAAGAGGAAGGGAGAATTAACTTGTTCTTAAAGACACTCTGATTAGGCTGTCAAGAAGGGAGACTTTATTTGTTATTGTCTGGACATATTCTTATGTGTGAACATTTTCAGTGATGGCTAATCTTGCTTGTCAACTTGACATTGCTGGGAAGAGGCCACTTCAGTTGAGCAGTTGCCTCTATTAGATTGACCTGTGGTCATATCTGTCAAGAATTTTATTGGTTGCTGATTGATGTAGAAATCCCAGCTCACTGTGGGTGACACGATTGTGGGCAAGTTGGCCTGGGCTGTATAAGAAAGACGATTGACTAAGCTAGAGGGAGAGAGCCACTAAGGAGCATTTCTCTGTTGTTTCTGCTTCTGTTCCTGCCTACTGGTTCCTATTTGAGTTCTGGACTTAGTACCCTTTGATGATGGACAATATCTAAGCTGAAGGGTGTAATAAATTTTTTTTCTCTTAAAGTTGATTTTGATCAGAAGCAAATTAAAACAGTTTGCTGTGTTATTATTTATTTGCTTTACTGGGTGTCGAAACCAGGGCTTCATGTGCTAGGAAAGCTACCGCTGAGCTACAGTCCCAGCCTTTTTGTCGCCTATAGAGTGTGTTTATTCAATCATACTATTTGGAATCGTGTCCAGGGACTTCTCTTTGGATTTTAGGTATATGCTAGGTACATGAAGATGATAGTCTTCCTCATTTCTGTTTCATTGGATTTGCAAGTTCCCATTATAGAGTGATAAATGTTTCTGCCATTGGGCATGTTACCTCTGCAGTGTTGTGAGTATTTCTTAGGGAGGCATCAAGTTCTATTCACCCAGATAACACACCAATGAATAGGTGAAAGAAACTATTCTACCCAAGTCCTGCTCAGTGAGCGTTACTTAGGGCTCCTTAATAGGAGCACTGTTAACTCTTAAGCAGCTACTCCACGGAAGGGAATGTCTCTCTAATTGTCTGTACATCTTTGAGAAGGGTTGGAGCCCCTCTCCTTATAACAACTGTCTCTAAATCAGAGGTCAGAGTTAATGATGTAGCGTTACCTTGGTTCATGTTAATTTACATATTGCATGCCTCCTTTTAGACTCTTGATTTAGGAAATGGGTAATAGTTACTTTTATGTGGATGCTAGCAGTAGCAGTTATTTTTGTTTAGTAAGACAATACAGGATTGGCCGTAGCTGCAGTTATTTTTTAAAGCAGGTTTAATTTTGAAAAATTTTATGTATATGGGTGTTTGAGTGTTTTACTCACATGTCTCTGTAACATGACTGTGCATGGGGCCCTTGAACACCAATAGATCTTCTGAATTGGAGTTCTAGATGGTTGTGACCTACCATGTAGGTGCAGGGAATCCAATCTGGATTCCTTGGAAGAACAGTCAGTACTCTTAACTGATGAGCCATCTCTCCAGCCTTGGACAGTTACTTATGTATATAATCGACTATTAACATGTCCTTGACAATAAACTGTTATAATTACTTAGATACAAAAATTACTGGATAATAAATGATTTGAACATTTACTGATATTAATACTCACTATATGAGCATTCTTAGACACAGTATTCTGCATAGTTCTGTTAAGCCTAGCTTTGTGGTGTTATAATTGGACTTCTGTTACTTCATTTTCATGAGAACACATACATGAAAACATTTGATATTTCTGTCTTTTGTAAGTAGCATATGCTTTCTATTTTCTACATCACTGTCCTGTTGTACATAGAACATTGCCTCTTTTTGTATACATCAGCAATATGTTTGTCCTTGTGTCTTTGGACTATATTAGGTGCTTTTCTGAGGAGAATTTTATTAATCCATTTATTCCTAGTAATAAGGATTGTTCAGCATCTTTAAGGAAAACTGGATAATTACATTTTCTTTAATTATTAAATTCATGTATAGATAACATAATACTTTCTCCCATAATACAGAATACAGATCCAATTTTGTGTTATGTAAGACAGGTATCCACATAGAATGATGAGCTCAGGAGAAATGTGTCATTTACAG
Seq C2 exon
GGGCTGGTGTCATTTGAGGATATAGCTGTGGAATTCACCTGGCAGGAATGGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGCTGTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058291-Zfp68:NM_001044747:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: