BtaINT0122958 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010291 | RBAK
Description
Bos taurus RB-associated KRAB zinc finger (RBAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001191256]
Coordinates
chr25:39081748-39087277:+
Coord C1 exon
chr25:39081748-39081805
Coord A exon
chr25:39081806-39087150
Coord C2 exon
chr25:39087151-39087277
Length
5345 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCATCGTGGTGCCATTACAGGGG
3' ss Score
4.72
Exon sequences
Seq C1 exon
GTACACCGGTTCACAGTCTAGCTTTTTCCAAGAGCAGCAGAACATGAATGAATCCCAG
Seq A exon
GTGAGTTTTCCTATTTGTTTGTATATACTCACACTTCGTTTTGTAATGCCTTTAAGGAAGTATATAAGGATCCACATTTTTCAAATGGGCAGGTAGAAACAAATAAAAGACACTGTCGTGTAAAATACACGTTACAGAGACAGATTGGCATCTAGACTCTGTTTAATTCACATGTATAGTAGTATGATGCTTTAGGACTCCTGGAATCCAGCTGCAAATATGATCGATTTTATAGAAAAAGGAAAATACCATCCACCCCTTCTGTGATTTGTGTTGACGACAAGGGGAAACCATTTCTTGGAGAATGTCATGTGCACGTGAGAAGGCTGCCTGTTGTGCTCTGAGTGTTCCGTGAATGTCACCCACATCAGGTTGTCAGTGTTGTGCAGGTGTGCTGTGTCCTTGCTGAGCTGCCAGTTTTCCCATCAGTCACGAGCGAGGGCTGTTGAAATCTGTGGTTGTGGTTTGTCTGTTTGTCATTGCAATTCTGTCAGTTTTTGCTTCATGAATTTCATTAAAAGATACCTAAACATTTAAGATTGTTATGTTCTCTTGATTCATTAGCCACTTTGTCATTGTTCAGTGACCTCCCATCCTGGTAAGAATGTATGCTGTGAAATGGAATCTGATATTTACAAAGCCACTCCAGTTTTCTTTTGAGTCATGCGATGTGCAATATCTTATTCTGTCCTTTAACTTTTAACCTATTTGCATCTTTATATGCAAAATACAGCATTTGAAGACAGCATATAGTTGGGCCTTCTTTTTTATCCAATTTGACAATTAATTCCTATTAATTGGGGTGTTTAGGCAGTTTGCATATAATGTAAGTATTAATACAACCAGTTAGGTTATAGTCTGGTGTCTTTATTTTCTGTTCATCCCATCTTCTTTGTCTTCCTTCCTTTGAGTTGACTTTTTTAATGATTCCATTTTATACCCTTTGTTGGGTTGTTAGAACACTTGTTATTTTACTGGATACTTTAGGGTTTATAATATGTAACTTTATCATAGTTTATACTCAAGTTATATACTATTTCACTTAGAGTATAAGAAGCTTCAGTTCCATTTCTCCCATCTTGGTCTTTACACTGTTGTTGCATTTTATTTTTGCAGGTTGTACCAATCCCATAATACATTGTTATTTTTAATTATCTTTTTAAAAGAGTTTTAAGTGATGAGAGAAAATGCATAGTTCCCATTTCTGGTGCATTGTTTTGATCCACATTTTTATCTGCTGTCATTTTCCTTCTGCCTGGGGGACTTTCTTTAATATCTCTTCTAGACCATACCATACTGTTAGTTGCTCAGTCATGTCCAACTCTAGGCGACCTCAGGGAATGTAGCTCACTGGGATCCTCTGTCCATGGAATTCTCCAGGCAACAATGCCAGAGTGGGTGGCCGTTCCCTTCTTCAAGGGAACTTTCTGACCCAGGGATCAAATCCAGGTCTTCTCCATTGCAGGTGGACTCCTTACTGTCTGAACCACCAGGAAGCCCTGTATTTCTTCTAGTTGGTAATGAATTCTTTTAGCTCCTGTATGTCTGAAAATGTCTTTATTTTACCTTCCCTTTTAAAGGAATCATTGCTGCTGTTGTTTTTTTTCTCCAGTACTTTAAATGTGTTCCTCCAGTGGCTTCTTGTTTATATGGTTTCCACCAGAAATCTGATGTTATCCTTATCTTTGTTCTGTATATAAAATCTTTTTTTTCCCTCCTCCTCTTGCTGTGTTTATTCTCTTTATTACTGATTTTTAGCCATTGGATTGTGATGTGTCTTGGTTAAGGCACATCTTATTTTATGCCTCACAGCCTGTCCAAGAACAAAGAGAATCATTCCATTCATTCTCTTTCAGGAATGTTTTTAAATTTTTCTAGTATAGATTTTGTACATTTCTGTTGCTATTGTAAACTGCATGTATGCCCAAATTACATCTTTTTCCTTTTTATGTAATGAGAGCTGTTGCTTTTATGTGTGTTAACTATAAATTCTGTTATCTAACAGAGTTCCTCTTACTGATTTAGTTCCATTGTTGATTTTCTGAGTTTTCTAGGTATAATATATTATCTGTGAATAGAAATACTTTTACTGACCTTTTGTTAGGCCTGTAATTGTTTTCTCTAATTGGAGATGATGAGTGTTTTGCCTTGTTTCTAATCTTAGTATAATCTTAGTGGGAATGTGTCTATTGTTTCCCCATTAAATTAGTCCTGACTGTAGAACTCAGAGAACTGAAGCATAAATATGTGTTTATAAACTTAAAGTGTATACATGTGATTGTATTTGTATATATCACACATACTGTGCATGGTAGGGTATGAGTATATATATACACAGGGCTTCTCTAATGGCTCAGTGGTAAAGAACCTGCCTGCCAACTCAGGAGATTCGGGTTCAACATGAGTTGGGAAGATCCCCTGGAGGAGGAATTGGCAACCCACTCCAGTATTCTTGCCTGGAAATCCCATGGACAGAGGAGCCGGTGGGTTACAGTCCCATGGGTTCGCAAAAGACCCACAAAACTTAGCAACTGAAAAACACCACCACATGCACGTATTCATCTTAGTGAAGTATCCATCAATTCCTATTTTCTTGAGGGTCTTTTTTTTAAAAATTAGGATGCATTTGAATATTTTCAGAGGTCTTTTCAGCACCTTTGGAAATGTGACGCTTTTCCTCTTAGCTGTATTACAATGGCAGATTGTATTAATGAATTTCCAAATATTAAACCAGACGATATGCTTAGAAAATGTCCCATTTAGTTATTATTATTATTTTTTTTTTAATTGCTCAGTCTTCTAACCCCTGCCACTTCTTGTCTTCTGAACTAAATTAACCCAGAAGATTTTTACTTCCTATGTGTGTGCTCAGTCAGGTCCAACTGTTTGAGCCCCTTTGGACAGTAGCCTGCCAGGCTCCTCTGTCCATGGGATTTTTCAGGCAAGAAATATTGGAGTGGGCTATAGTTAAACTAGGGTAACTAGTGTTTGTTTGTTTTTTTTTAATATTTAACTTTAGCATTTTTATTTTCTAATCATAAAATTTTAGAAATCTTATCTGAATATTTCTTGATCTATATTTCTCCCAGTGTTGTTCTTTGCAGATTATATGGCCCCTTTTAAGGATGTTTTGTTTTATTTTGTTTGTTTATTTTTATGATCTTTGGTTCAGGAATCTCTGATGATTTTTCATTGTTCATCCTCTGTAATCTCTTTCTGAAAATGTTGGATCTGGCTTTCATACCTATGATTTTTCTGTCATCATTCCAATTTCTTATTTTCAGAGAAATTTTCTAAGTTATATATTCTGTGTCACATTTGATAATCAAGCTTCTTACTTCAGGATTTTTTTTAAATTCCACAATCCAGTCTTCAATTTCTAAGTATCTACAGTTGCTGTTTCTTAGCAGAATGTTCTCATTTTCTGGAAGCAATATTCTGCTTAATTAATTATAAAATATAAGTCAGTGTGAGTTGTTTTCCTTTATGAATATGGTTTCATCATTGTTGAGTTGTTTATCCTGATGCTTATTTTTTATTTATATTGTTTTTCTCAGCTGATGATTCTTGATTTTTTTTAAAATTTCATCTTTTGAGAAAATAATTTCTAATCAGTGATGGCTCAGTGGTAAAGTATCCACCTACCAGTGCAAGAGACACAGGTTTGATCCCTGGATTATGAAGATCCCCTGGAAAGGAAATGGCAGCCTGTTCCAGTACTCTTGCCTGGGAAATCCCATGGACACTGGAGCCTGGTGGGCTACAGTCCATGCGGTCCCAGAAGAGCTGGACACAACAACTAAACAGCACCAACAATGTGAACACACTTAACCTGTGGCCACACCTCATTCCTCTTTCCTTCAGGGAGGGGGTGAGGGTGTGTCCTTAGCATCACTGCATTTTTTCCTCCACATTTTTTATCGTGGGAAGATACACATGACAAAATGTAGTACGGTATCCATTTCTAAGTGTACAGGATAGTGGTCTTAAGGACATTTATGTTGTTGTGCAGTCATCACCACTATCCGTCTCCATCTGTTTCTCATCTTTCAAAACTGAAACTCTGTATCCATTAAACACTGACTCCCCATTCCCCTTCCCCAGCCCCTGGCGATCACCATTTTCTATTTCTAGGATTTTGACTACTCTGAGTAGCTCATCTAAGTGTAATTATGCAGTATTTGTTCTTTTGTGACTGACTTATTTCACTCAGCATAGTATCCTTAAAGGTCATCCATGTAGTACCATGCGTCAGAATTTCCTGCCTTTTTCAAGCTGGGTCACATTCCATTGTGTGTATTATCACATTTTGCTTAACCATTCATCCATCGATGGATGGTTATTTCTGTGTTTTAGCCTTTTTTTTTTCCTCCCACGCTTTTAGCTTTTGTAAATAATGTTGCTATAAACCTGGGTGTACAGTATCTCTTCAAGGCCTTGCTTTCGTTTTTTTTTTTTTGGAGGGTGGAGACCCAGAAGTGGAATTGCTGAATTATGTGTTAATTCTGTTTTTCATTTTTGGGGGAGCCACCATGCTGTTTTCCATAGTAGCTGCACCATTTTACCTTCCCACTAACAATGCATTGAAGTTCCACTTTCACCACTTCTTATGAATTGTAGAGGATTCCCTAGATTCAGAGGATTCCCCCTGAACTCAGCTGAACCTGCAAAGCCTTGCTGCCAACATATAATTAAAATGGTTCACTTCTCTCTTGGTAGGCCACTCTCCACCTTGTATGTGTCACTCTAATAATACCTCAAGCAGTCATTCAAGCAACACATTTTATTGTTCCCAGAATGAGATGCTTGAGATATCATTTGAAGGCAGTAAAAAACTTAGGCAAGCAAATGGCTCCAAGTAACTGGTAAGGAACAGAGGGGCCAGAGGATGAAAGCACTGAACCAGGATGGCTGACTGCTGGGCTGCACCAGCATGAAGAGGTGGGAGGCAGAGGCCTTGCCCATAGACGGCACTGAGGGAACGACAGGGAGTGGAATGCGTATGTTCACTGACCCAGTGCCTCCCAATGGGCTGTAAGCTTTTTGAGCCGGAGTAGGGTTTCATCTTTCTTCATCCTCTGATAGAGAACTCAGATACTTTAAACACAAAGTTGGAACTCTTTTTTATTTCTTTCAGTTTGAGAGTTTTTTGAAAGTTTTGTTTTTTGGCACATTAAAGAACTCAAAGGTAGTGTGTTTCTAACATGGCTTGTTTTCCTCTCAACATCTGTTAACACAAATGAGGCTTTCACTCTTCACAGTTACCTTTCCCAGTGAGCTGGGTGAGCTCCTGTCCTTGTGTGTCAGGTCCGTGTCACCCAGTTCCCATCGTGGTGCCATTACAG
Seq C2 exon
GGGTCAGTATCGTTCAGGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGCAGCAGCTAGACCCTGAGGAGAAGATGACCTACAGGGACGTGATGCTGGAGAACTACAGCCACCTTGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010291:ENSBTAT00000013588:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]