MmuINT0179788 @ mm10
Intron Retention
Gene
ENSMUSG00000012640 | Zfp715
Description
zinc finger protein 715 [Source:MGI Symbol;Acc:MGI:1917180]
Coordinates
chr7:43301170-43301737:-
Coord C1 exon
chr7:43301611-43301737
Coord A exon
chr7:43301266-43301610
Coord C2 exon
chr7:43301170-43301265
Length
345 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AATATCCTTTTGATTAACAGGGT
3' ss Score
7.28
Exon sequences
Seq C1 exon
AGATGGATGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCATCTGGACTCCGCCCAGAGATGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
Seq A exon
GTGAGCACGGCTGGCTGGGGACCCAGGGTGGACCTTATTGAGGAAAGATGTTCTTCCTTCTCTTTCCAAAGCATAGTGAGGTATCAGAAGTGTAATCTCTGTCAGTCTCTGTCTCTCTTCCTTCCTCCCTTCCCCGTCCCCTCTGTGCATGTGTATGTGTGTGCGTGCATGCGTGTGTATTTACTTCATTTGTCCTGGTGCTTCATTTCTTTTGTTCACCTACTAGGATTTATACAAAATAAGAGTGTTGACTTGGTTTTCCCAATGAGGTAGTGCAAAGCTTCATTGCATCATCTCTAAAAGATAAGAAACTACCCCAAAACCCAATATCCTTTTGATTAACAG
Seq C2 exon
GGTATTCCATTCCCAGTCCTGGAGTCATCTTTAGGATGGAAAAAGGAAAGGAGGCACAGACAGCAAAGGCTGAATTCCCAGGCCAGAGATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000012640:ENSMUST00000107986:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.388
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=WD(100=93.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGAGGATGTAACTGTGAACT
R:
CTTGACATCTCTGGCCTGGGA
Band lengths:
214-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types