MmuINT0179793 @ mm9
Intron Retention
Gene
ENSMUSG00000069184 | Zfp72
Description
zinc finger protein 72 [Source:MGI Symbol;Acc:MGI:3033356]
Coordinates
chr13:74512416-74514014:-
Coord C1 exon
chr13:74513884-74514014
Coord A exon
chr13:74512512-74513883
Coord C2 exon
chr13:74512416-74512511
Length
1372 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTCCATTTTTCTACAAACAGGTC
3' ss Score
8.76
Exon sequences
Seq C1 exon
CCAGGGGTGGTTGTCATTCAGAGATGTGGCCATTGATTTCTCTGCAGAGGAATGTGAATGCCTGGACGCTGCTCAGTGGGATTTGTATAGCGATGTGATGTTGGAGAATTACAGCAACCTTGTCTCTCTGG
Seq A exon
GTGAGCATCACTTCCCTATTGAATCCTTAATTCGTTGTTAACATTTATAGAAAATGTCATGGGAGCTTATGTTTTATATCAATGAATTTTATGTTTCTGCTTTTAAGGAAAAAATAAAGGGATGGTTAGTAATCATTTAGATAAATTTTATTATGTTTCTTCTACTTTTAACCCCTTTTGTTTTAAATTATGAATTCTTTATTCTAGAAGCAATTTTAGAAATTAGTTGAACGAAACATACCTCACACATCTTAAAGTAAAACGATGCACCCTTAAATTTAAAATTTTCTGTATTTGTAGGTAAAGCTCAAGATTTACAGATTATAAAATCTTCCTATGTATTATAATATGTTTATCAGAGTAGGGTTAAATGGGGTCCTGTGTCTGCTCCGCCACTGGGCTTGGGCCACTGAGGGAGACAGGATGAGGGAGTTTTGATTGCGCTTAGCCCACACCGGGTGAGGCTATGGGGAAGCCGCAGGACACCGCTCCAGGGGTGAGGTCCCAGGAACAGCTGAAGTTGGCTCGGGGGTCCCTGAGCCTGCAGGGAGGCCAGGGCCATCTGTTCCTCAGGCTCTTGGGTACCCAGGTACCGCTGGGAGCTGTGGAAGAGCTGAGAATGGAGTGGGGACCCATGGGCTGGATCTGGCCCGGAGCCATGGGCAAAAAGAGGGGAACTCCAACTGGATCCCGCAGGGAGGAGTCCTTGGCTTGTTGATGGCTGGTTGGCTTGGCTTGGTGGTTGTGACTGGGAGCACAGAGAGCCTTGTACTGGAGATTAGACACTGTTCAATAGGCAAAGGTCTTCTATATGGTAACCCATGGCAGATCCTGATGAAAAGAGACAGTCCATGGTTTTAAGGCATTTATTGTCATGGCAGAAAATGGATGAGTAAAACCATACCCACACAAGGTGGTGGCACATGCCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCAAGGGCTACACAGAAAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAACCATACCCTACTTCTCAGGGAGGGGTTAAATACCTTTTGTAGGGAGGCGTGTCTGTGAAGGGGAGTTTATTGGCTAATTGTCAGGAGCCTAGTATCCAGGAACCAGGCAAAATGCCTGCTAGCTCAACCGGGAACCAGGCTGTCTTTCACGGTCCTACATATCAAGAAACATTTAGAGAAATGTTTTTTTTTCCTGCAAGCTTTCATTAGTCTTCTTTCCATATTATAAGCACAATACTTGGATAGAAATGCTGATTTCCCAGAGAACAACATAAAGCATCACGCTCCATTTTTCTACAAACAG
Seq C2 exon
GTCTTGCTTTCTCTAAGCCCTATCTGGTCACATTTCTGGAAAAAAGACAACAGTCTTGGGATGTGAAACAACAAGCAACAGTGGCTACATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069184-Zfp72:NM_001081680:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGGTGGTTGTCATTCAG
R:
GGGTATGTAGCCACTGTTGCT
Band lengths:
225-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: