MmuINT0179823 @ mm10
Intron Retention
Gene
ENSMUSG00000057396 | Zfp759
Description
zinc finger protein 759 [Source:MGI Symbol;Acc:MGI:2446280]
Coordinates
chr13:67136718-67137405:+
Coord C1 exon
chr13:67136718-67136844
Coord A exon
chr13:67136845-67137309
Coord C2 exon
chr13:67137310-67137405
Length
465 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TTCCGTTTTTCCACAAACAGGTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AATATGCTGTCATTCTGGGATGTGGTAATATATTTCTCTGCAGAGGAGAGGGAATACCTGGGTCCTCCTCAGTGGAAATTGTACAGGGATGTGATGCTGGAGAATTACAACAACCTTGTCTTTCTAG
Seq A exon
GTGAGGATAACTTCCATGATGAATTTTTAATTTACTGTCAGTATGAAACTTGTTCCCTTTGTACAGTATCTCATGGGAACTTCTACATCCATCAGTAAGGTTCATAGGGCTACTTTTACGGAAATTTTAAATTATTCATATAGCTTTGAACTCTTTCTTCTTGTATTCATACCACCCCTCCCCCCAAATATATAGTTTGTCTTAAAATATAAGTGGTACACCTTAAAGAGAACGTCACAAACTAAAGTTGTAAACATTCTCCTTGTAACTGAGGGGTGTGACATTCAGGACCTGCAGTTTCCAAGTTCCTCCTTAGCATTCTGATGTGGCCATCAGAAAACACGTAACAAGTAGTCCTCTATTCCCCTTTATTGTGTCTTCTCATTCCTTACACACAGTCCTGGAGGGACATTTTACTTCCCATGTAACCACAGTAACAATGTTGTTCCGTTTTTCCACAAACAG
Seq C2 exon
GTCTTGCTTCCTCTAAGCCATACCTGGTCAGATTTCTGGAGCAAATACAAGAGCCTCTAGATGTGAAGAGTCAAGTGGCCATCTCTATGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057396:ENSMUST00000052716:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCTGTCATTCTGGGATGTGG
R:
CTGAGTACATAGAGATGGCCACT
Band lengths:
222-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types