MmuINT0179823 @ mm9
Intron Retention
Gene
ENSMUSG00000057396 | Zfp759
Description
zinc finger protein 759 [Source:MGI Symbol;Acc:MGI:2446280]
Coordinates
chr13:67237654-67238341:+
Coord C1 exon
chr13:67237654-67237780
Coord A exon
chr13:67237781-67238245
Coord C2 exon
chr13:67238246-67238341
Length
465 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TTCCGTTTTTCCACAAACAGGTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AATATGCTGTCATTCTGGGATGTGGTAATATATTTCTCTGCAGAGGAGAGGGAATACCTGGGTCCTCCTCAGTGGAAATTGTACAGGGATGTGATGCTGGAGAATTACAACAACCTTGTCTTTCTAG
Seq A exon
GTGAGGATAACTTCCATGATGAATTTTTAATTTACTGTCAGTATGAAACTTGTTCCCTTTGTACAGTATCTCATGGGAACTTCTACATCCATCAGTAAGGTTCATAGGGCTACTTTTACGGAAATTTTAAATTATTCATATAGCTTTGAACTCTTTCTTCTTGTATTCATACCACCCCTCCCCCCAAATATATAGTTTGTCTTAAAATATAAGTGGTACACCTTAAAGAGAACGTCACAAACTAAAGTTGTAAACATTCTCCTTGTAACTGAGGGGTGTGACATTCAGGACCTGCAGTTTCCAAGTTCCTCCTTAGCATTCTGATGTGGCCATCAGAAAACACGTAACAAGTAGTCCTCTATTCCCCTTTATTGTGTCTTCTCATTCCTTACACACAGTCCTGGAGGGACATTTTACTTCCCATGTAACCACAGTAACAATGTTGTTCCGTTTTTCCACAAACAG
Seq C2 exon
GTCTTGCTTCCTCTAAGCCATACCTGGTCAGATTTCTGGAGCAAATACAAGAGCCTCTAGATGTGAAGAGTCAAGTGGCCATCTCTATGTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057396-Zfp759:NM_172392:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCTGTCATTCTGGGATGTGG
R:
CTGAGTACATAGAGATGGCCACT
Band lengths:
222-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: