MmuINT0179926 @ mm10
Intron Retention
Gene
ENSMUSG00000098022 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30072029-30072900:-
Coord C1 exon
chr7:30072781-30072900
Coord A exon
chr7:30072140-30072780
Coord C2 exon
chr7:30072029-30072139
Length
641 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
TTGTGCTTTGATTTAACTAGGCT
3' ss Score
7.16
Exon sequences
Seq C1 exon
AGTCCCCGCGCAACGCCCTGTAGGCTCTCGGGGGTCTGGAGATGCAGCCACTGTCACCTCAGCGCGTGGGGCGGGGCAACTGAGCCGAGCCTGGGTCCCAGTTCCGTGAACTTAGTGAAG
Seq A exon
GTGCTGCAGGGAGCAGGGGGTAAGGGCGGGGACAGGGAGGCCCCGCGCCCCTCATACTGGGTCCGCGCCTCGGCTTGCTGCGTGGGGACCACAGTGGCGAGCTGTGCCTGCTGGGCGTGGCAGGGCGTCGGGGTGGCAGCCACCGCGACTGAGTGCGGCCCGGAAGCCACGGCGTGATGGCATTTGTGCGAGTGAATGGGGTGCAGAGCGGTTGTGTGAGCGAGGTTGCCGAGGTCCTGGTGTGTGTGATTCTGGCCCCAGGCTCGGCTGCGGTGTAGCCACATCAGTCCCAAAGAGGAATGGTTCCCCAGCCATTCACCTGAGCAACACACAAGACTCCCAGTAAACAAAGCAAAGAGCTCCGGGTCTTGAGAGGGGTCTGAAAGATGGTCCCCGATCCCCAACACACACACCCTTGGCTGGTTCCCTGGGGTTACCCCCAACACGCCACACGTGCTCAGATACAGTCACTCGCTGGACAGGCTGTGTGCGATCCACCTAGGGAGCTATTGTAAACTTCCTGGCCATCTGCCGCCCTGGCCTTTCTTAGGTACCAGGGCAGGACAGCTGAACTCGCTCCCGGGTGTGAGTGATGGGTGGTGGTGACCGATTGGTTGTGTCTTGTGCTTTGATTTAACTAG
Seq C2 exon
GCTGGACAAGGCTCCGAGAAAAGTTTGGACGTTAACATTCGCTCCTACTCCAGCCTGCCTTTAAGTGCTCACAGGAAGGGGAGGGATAAATCGCTGTTGCCTGTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000098022:ENSMUST00000080834:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGGCTCTCGGGGGTC
R:
CTTTTAAACAGGCAACAGCGA
Band lengths:
214-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types