MmuINT0179926 @ mm9
Intron Retention
Gene
ENSMUSG00000058447 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30857048-30857842:-
Coord C1 exon
chr7:30857800-30857842
Coord A exon
chr7:30857129-30857799
Coord C2 exon
chr7:30857048-30857128
Length
671 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
GCTCCGAGAAAAGTTTGGACGTT
3' ss Score
-24.36
Exon sequences
Seq C1 exon
AACTGAGCCGAGCCTGGGTCCCAGTTCCGTGAACTTAGTGAAG
Seq A exon
GTGCTGCAGGGAGCAGGGGGTAAGGGCGGGGACAGGGAGGCCCCGCGCCCCTCATACTGGGTCCGCGCCTCGGCTTGCTGCGTGGGGACCACAGTGGCGAGCTGTGCCTGCTGGGCGTGGCAGGGCGTCGGGGTGGCAGCCACCGCGACTGAGTGCGGCCCGGAAGCCACGGCGTGATGGCATTTGTGCGAGTGAATGGGGTGCAGAGCGGTTGTGTGAGCGAGGTTGCCGAGGTCCTGGTGTGTGTGATTCTGGCCCCAGGCTCGGCTGCGGTGTAGCCACATCAGTCCCAAAGAGGAATGGTTCCCCAGCCATTCACCTGAGCAACACACAAGACTCCCAGTAAACAAAGCAAAGAGCTCCGGGTCTTGAGAGGGGTCTGAAAGATGGTCCCCGATCCCCAACACACACACCCTTGGCTGGTTCCCTGGGGTTACCCCCAACACGCCACACGTGCTCAGATACAGTCACTCGCTGGACAGGCTGTGTGCGATCCACCTAGGGAGCTATTGTAAACTTCCTGGCCATCTGCCGCCCTGGCCTTTCTTAGGTACCAGGGCAGGACAGCTGAACTCGCTCCCGGGTGTGAGTGATGGGTGGTGGTGACCGATTGGTTGTGTCTTGTGCTTTGATTTAACTAGGCTGGACAAGGCTCCGAGAAAAGTTTGGAC
Seq C2 exon
GTTAACATTCGCTCCTACTCCAGCCTGCCTTTAAGTGCTCACAGGAAGGGGAGGGATAAATCGCTGTTGCCTGTTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058447-Zfp82:NM_177889:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: