MmuINT0179936 @ mm10
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109706357-109709527:+
Coord C1 exon
chr8:109706357-109706419
Coord A exon
chr8:109706420-109709410
Coord C2 exon
chr8:109709411-109709527
Length
2991 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
TTATTTTCTTATTATTGCAGGTC
3' ss Score
10.37
Exon sequences
Seq C1 exon
CTTCACATCACTCGGATTCGGGCGACTTTACTTTGCTTCGTGGGAACCTCATCAGAGCTGGAG
Seq A exon
GTGGGAGTGCACCCTCTTTTCTTTAAGGCTGGAAAAGGGCGCGCGCACACACACACGCACATCTGTAGTGTGTGTGCCCTGGAAGCTGCATCCTAACACCTGTGAGAGCAGAGGCAGGATGAGGGGGTGGGGGCCAGTGCATCCTTCCCAAGGACTCTTGACTGTGGCTCTATAGATGACAAAAACAAAAACCCCTACTCCCTTTAAAAGTCGCATCCCTTGTAGGTCGATCCTCAGTTTCCCGTTCTTCCCAGGTTCCTCCCTGAGCAGAAGATACTCAGGCGGCTCGCTATCCAATTACATTCCGAGCTTAAGTTTCACAATTGGGCAGCGCTGAAAGCAAAAGGGACCAAGTGACCTTTTGTACTTATGGGGTCTTGTTTTAAGAGGGTTACAACCTATAAAACTAACCTCAGATATTGTGCAGTTTGGGTCAGGAGTGGCCTCCCCGTGCCATTTGTCTGTCTCCTTACTTATTTTCCATGGTTTCCCCCCCTCCTCTGGACTTTTTCTTTCTAGTGGGTTTTTGAATTCTTGTGCTTTGGCTTTGTTTTGTGCTAAGGGAGGGTGTGTGTTTATTTTGCCTGGATCCCTCAGGTGTGAAGTCCCAGGAGGGACCATCTGGTCAGTTCCCCACTGGGCCACTAGGAGGCTGATGAGAGGCAGTGGTTCAGCTGTGGCTGCAGGTTTCCTCTCTGTGCCTTGTAGCTTTCTTACTGAACCAGTGTCTTGCCAGGATGATCTAAATAGAGCCTGGCACTCCTTCAAACAGACTTTATTACCTCAGTCGCAGAGCTTCGGTTCCTGGTCCTTATGGGGGTAAATGGAGATGAGATATCATTTGTTTTCTGTTACATGGTAGAGAAGTATAGAAAGATTGGCAGTCTGCATCTCATTCAGCTTTCAACTTTGGGAGTCCCCAGACACAGAGAAAGACCTAACGTGTGATATTCAGTCAGAGCCTATATTAAAATGGGTAGGGAGGGCTGGGTGTGGTGGCTCACGCCTTTAATCCCAGCACTTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTCTATCTCGAAAAATTAAAAAAAAAAAAAAAGTAGGGAGAATAAACCAGGCGTAGTAATACCTCTGATCCCATTGGTCAGAAGGCTGAGGCTGGGGAGTCATTGAATCAAGGGGTTTGAATTCTTGTACCTTAAGACTCAATCTCCAAAAAAGAGTAGAGGCAGGGGAAAGGAGTGACTACCCCCTACAACTGGGGGTGTAGCTTAGTCAGTAGTGTGCTTGCCCACTATGCACAAAGACCTACCTAGCGTACACAGAATTTTAGATTCAGTCCCCAGCACCATGGAAGGCTGGGTATGGAGGCAGGTACTGCACCTGCCTGTACTGTGTTGAGACAGGAATATCAGAAGCTCAAGATCACTGTTGGCTCTATATCCCGTTCAAGATGAGTTAGGATGCATGAGACTCTCCAAGAAAAAGAGAACCAGAGAATACATCCCCTTTTATTAGATGTCAGGACGCTGCTCTCTAAAATTGTTCTTTCTGTTGTACATATTAGGAGTTATTTTCCTTTTTTTAATTGAAGGTCTGAAAAGAACTGTGTTTGGTATGCAGCTATGATAGAAGACTGCCTGAAAGCTGCTTCCTTGCCACTTCCTGTGGAGGCCTGTCTTTGCCATTTGCGGTTTCTTTCTTCTTTTGGTAAGGGGAGGCAGGATCTGATTACAGGTCTGAGGGCCTTCTAGCTACATAGAGGAGTAGGTTGGCATTATCAGGTGAGCTTCCTTAACTGGAGTGCACAGTACATCTAGCAGTTTGTTTTAAAGCGGTGAACTATATATTTCTATATGTGAGCCCAGTTTAAGACAGCGAGAACTAAAAAGAACCAGGGAGTGACTAAACCCACATCCCTAACTTAGGTAGAAAACAGAATTTCACCTTTTCCATTTACATTGTTCACTCTGCTGTGTTTGTTTTGTGGTGTTGGGAATCGAACCCAGGGTCTGATGCATGCTAGGCAGGCACTCTGCCAATATATCTCATCCCTAGTCCTCACTCTGTCTTGTAGAGAAAAGGCCACAGCTTCTGCAACTAACCCACTTCAGAGTCTCTTACATTGCTTATGGCTGAGAACCAGTGTTGTGGTTAACAAGGAACCTCCAGGTTTGAGAATTTGCCTGCCCGTCTATCAGATGGGCAGCTGCACATCTCTGCTGCTCCTCTTGTATAGGGCGCTTCGCCCTTTATTCCTCACTGGTCTCTTGCTACACAGCAAAATTGAGAAGAGGCTAGATTATGACTTTTGACCTCTTCAGACCCATCTGAGCAGGGCCAGCTGGAGTTGTACATTAGGAGACTGAATTAGTACTCCACCATGTGAGAGGCATCTACTTTTCTGCAGAGAGCGTGTCTTAAGTGGTGGAAGTTTGATTTGCTCTTGTATCATCATGCCTCGGCCTTATTGCAGATAAGTGATACCCTTGCTGCTTCTAAGCATCGTTCCTTAGAAAACTTTCTAGAGATACAGACTCCAGGTCTTGACTTCCAGTTGCACATGTGCCAGGTCAGCCACTACAGGTCATTGTTTGTTGTCTTTTTGCTTTCTTTCACATCCGTGGGAGCAATCCCTTTACCCACAGTACTTCTAACCTTGATTGCCCGGATTTGCATCCTTTTCTATCCAGTGCTCTTGACTTCGACCACTTAGTAGTAGTCTGAATCCCAAAGACAGCTTTATAGAAGAAGTCTCATAAGTAGTCGCCTCTCGAGTTTCTTGGTCCTTGACTTTGAGTTAGACATTTAGTTACCTTTTTCATTTCATTAGTTTAGTTATTTATATCTAGTGAGTTTTATATGCTCAAGAAGTATTTTTTAAGATCCTTAAATGTTCTAATTTTATAATTTCTGGGAAGAATAACAGGCTAACAATATTTTATTTTATTTTATTTTATTTTCTTATTATTGCAG
Seq C2 exon
GTCAGCACCGTACGAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGGAAGAACGGAGCTTGGATATCAGGGAAACATGTCCCGTAGGAAACAGACAAACCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728:ENSMUST00000212964:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.821
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types