MmuINT0179936 @ mm9
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112231929-112233427:+
Coord C1 exon
chr8:112231929-112232044
Coord A exon
chr8:112232045-112233310
Coord C2 exon
chr8:112233311-112233427
Length
1266 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TTATTTTCTTATTATTGCAGGTC
3' ss Score
10.37
Exon sequences
Seq C1 exon
GTCTGAAAAGAACTGTGTTTGGTATGCAGCTATGATAGAAGACTGCCTGAAAGCTGCTTCCTTGCCACTTCCTGTGGAGGCCTGTCTTTGCCATTTGCGGTTTCTTTCTTCTTTTG
Seq A exon
GTAAGGGGAGGCAGGATCTGATTACAGGTCTGAGGGCCTTCTAGCTACATAGAGGAGTAGGTTGGCATTATCAGGTGAGCTTCCTTAACTGGAGTGCACAGTACATCTAGCAGTTTGTTTTAAAGCGGTGAACTATATATTTCTATATGTGAGCCCAGTTTAAGACAGCGAGAACTAAAAAGAACCAGGGAGTGACTAAACCCACATCCCTAACTTAGGTAGAAAACAGAATTTCACCTTTTCCATTTACATTGTTCACTCTGCTGTGTTTGTTTTGTGGTGTTGGGAATCGAACCCAGGGTCTGATGCATGCTAGGCAGGCACTCTGCCAATATATCTCATCCCTAGTCCTCACTCTGTCTTGTAGAGAAAAGGCCACAGCTTCTGCAACTAACCCACTTCAGAGTCTCTTACATTGCTTATGGCTGAGAACCAGTGTTGTGGTTAACAAGGAACCTCCAGGTTTGAGAATTTGCCTGCCCGTCTATCAGATGGGCAGCTGCACATCTCTGCTGCTCCTCTTGTATAGGGCGCTTCGCCCTTTATTCCTCACTGGTCTCTTGCTACACAGCAAAATTGAGAAGAGGCTAGATTATGACTTTTGACCTCTTCAGACCCATCTGAGCAGGGCCAGCTGGAGTTGTACATTAGGAGACTGAATTAGTACTCCACCATGTGAGAGGCATCTACTTTTCTGCAGAGAGCGTGTCTTAAGTGGTGGAAGTTTGATTTGCTCTTGTATCATCATGCCTCGGCCTTATTGCAGATAAGTGATACCCTTGCTGCTTCTAAGCATCGTTCCTTAGAAAACTTTCTAGAGATACAGACTCCAGGTCTTGACTTCCAGTTGCACATGTGCCAGGTCAGCCACTACAGGTCATTGTTTGTTGTCTTTTTGCTTTCTTTCACATCCGTGGGAGCAATCCCTTTACCCACAGTACTTCTAACCTTGATTGCCCGGATTTGCATCCTTTTCTATCCAGTGCTCTTGACTTCGACCACTTAGTAGTAGTCTGAATCCCAAAGACAGCTTTATAGAAGAAGTCTCATAAGTAGTCGCCTCTCGAGTTTCTTGGTCCTTGACTTTGAGTTAGACATTTAGTTACCTTTTTCATTTCATTAGTTTAGTTATTTATATCTAGTGAGTTTTATATGCTCAAGAAGTATTTTTTAAGATCCTTAAATGTTCTAATTTTATAATTTCTGGGAAGAATAACAGGCTAACAATATTTTATTTTATTTTATTTTATTTTCTTATTATTGCAG
Seq C2 exon
GTCAGCACCGTACGAGGAGGTAGTGACCTGTCCAGGGGTGAAACTGGGGAAGAACGGAGCTTGGATATCAGGGAAACATGTCCCGTAGGAAACAGACAAACCCAAATAAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-Zfp821:NM_029468:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGAACTGTGTTTGGTATGCA
R:
AGTGAACTTTATTTGGGTTTGTCTGT
Band lengths:
230-1496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: