MmuINT0180006 @ mm10
Intron Retention
Gene
ENSMUSG00000097333 | Zfp87
Description
zinc finger protein 87 [Source:MGI Symbol;Acc:MGI:107768]
Coordinates
chr13:67521193-67526177:-
Coord C1 exon
chr13:67526077-67526177
Coord A exon
chr13:67521320-67526076
Coord C2 exon
chr13:67521193-67521319
Length
4757 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TTCATTTATTTTTATTTCAGGAA
3' ss Score
9.44
Exon sequences
Seq C1 exon
GCGAACCGCACTTCCGCATCCCGTCTGCAGACGTTTGTCTTCCCCTAAGTTAGCGGTGCTGTGTCCTGCTCCTCGCTCTCGATCGGATCTCTGACATGGAG
Seq A exon
GTTGGTCCAGGGAGCAGTGCAGCCTGAGGGAATGTGCAGGGGAGTGGTCCAGCTTGGAGGGAGCGGAGCCGAGGTGGACCAGAGGCAGGGAGAAGCCGAGTTGGTGATGCTGTGCTGCTGACCTAAGCTGGGCCAACTGAGCCTGGATGCAAATCTGGGTGGGGAGAGCAGTATGGGGGTGGCGCTGTGAGTGAAAGCTTTGTTAGGACGCGGCTGTATACGCTTCTGGGGTGGGAGAGCTGGCTCTGTAGCACAGAAATGTGGAATGGTGGAAGGTTCAGTATTGCCCCCCCGCAGGGTGGGCCGGCCCTCTCCTTGCGCCAGAGGTGTAAATGGGAGCCCACATTCCTGCTTGCCTTAGGAAGTCTGTTGGCTGTGATCACTTGGCCACTTGACTGTGGTCAGATTTCTCAGAACTTCTAGATCGAGTGGAGATCTGGCACCTCCTATTTATGGCCAGCCTAATATTCTTGGTTTGAGTTAATAGCTGCTCCTCGTTTCCAGGGACAGAGTTCTGCTAAGGAGGTTGGTGTATAGGATGTTAGTACCATTCTCTTTGGAATAAATTGTTAGGTTTTTTTTGGTGTGTTGTTTTGAATGAGAATATTTCATGGCCACCTCCGTGATCTATATCTTCACACTTAACACTCACATGTAGAGACAGTCTAATGTTCTAAAGGAGAAGGCTTATTCAGGATATTATTGATCCTACATTGTAGAGTAAAATACTAGAAAATACCGTATCCACTTATGTCAGAGATTGTGTAATGTCAGAAGCTTGGACTCCTTTTCTGAAACAAATGAGGGGGTGATGGGAGCAGAGAGATGGCCTGGAGATTATTAGTGACTTCGGGGAAAGGACTTGAGTGTCCCTGGGGAGGAGAAGTGACCTTGAATACCTAACAGTGTTTACGTTGCTCTTCAATTGTGAGCTTCTCTTCTATCTCTGGACACTGCACATCTAAACCTCCCTTAACAACTACTCTATCACTGCCCCGACTGTGGCACTCAGGTTCCCTGTTGCTCCCTGAACATTTGCCAGTTTATCCACGTCAGAAAGATTGAAAGGTGAATTTGAAGAGCTTTTGCTCAGTTAGGGTCCCTTGCCCATAATAGACTCCTTGGCCTGTCTCTTGTATAGTTTTGTAGTTCACAACACTTTAAGTCAAATCAAGTGTTTGTGTGGCATTAAAGCCTATTATTCATAAGGAACATGGGTTTTAAGCCACCTTCAGTATGAATATTTCTGTGGACTATGTAACTGTTATGTAAAAGACAGAGACTTCCTAGTTAATGTCACTGGCCTACAGGACAAGAACAGCATTGTGTTTTCCATTATCTAAAGTGGGAAGAGTACACTACCTTGTGAACCAAAAGTGGTTTCCTAAGAAGTAGGCATGAAGCAGAGGCATGCTGTCCTGTAACTTACAGACCTTTCCAGTATATATACTTTAAACACACCTGTGATTGAAAGAAACCAAACCAAACCAAAACTGAAGCCTCTTCTTGGAGCATCCTTGTTATCTCTGCATTGTGAAGTGAAGGCGGGGGATTAGGACTTCAAGGTCATCTTCCATATTATAGATTACTCAAGATGAACTTAAGCTAAGTACGATTCTGTGTAAAAATTATTAAAGGTTTTAAAAAACAGTTCATGGATACACTATTTCTGATGGCTTCTGTCACTTGGCTTAGTACCAGCCTGACAGAATTCCGTCTAACTGACATGGCTCACATTTAAAACATATACTTGAGAAGGTTTATTGACTGTATTTGATGTGTACTTTAAAAATCTCCTGCTCACATGCTTCTGTTAAAGGCGTTAAATTTTGGTGATCAGATAGATAGTCCTCTGCATTACTGTGTGTGTAGGGACTTTACGCTTTGTCTTGCTTGAAGATTCCTCCACATTTGCAGGGAATGTTTATTTTCTCTGATTGTTCATTTGTATTAGTTTCTGTTGGGACCTCTTGATGTGTCTTCTGGTTTTCCTGGAATTCTTCCCATTTGTGCTTCTTAAACATTCAGTCTGGGACTTGAGTCATTCATTCCCCATTTCCCTCTTTAATCCTTGACTGGTGCAGCCTCCATGATATACACTTCCCTCTTAGTCCTCACTGCACAGGTTCAGCTATGTGAGGGATGTTTCTTTACCTTTAGCCTGAACGGAATTCCAGTCCCACACACGGATAATGGCAACCGCATCCTCCACTGCCCTTCACAGGTGTGCCATCCAGCCACGAAACCAAACTGCTAAATTGAGACTTCTTCCTCCTCATTGGGGAGGAGTCTAATATTTCATGGTTTCCATTCCTGACCCCTTTCTTTTTATTTTTGTTTTTGTTTTTCTGAGTGACCATCTGAGGGAAGGAATTAATGGGTTTTTGGTTTGGTTTGGTTTGGTTTTTGGTTTTTTTTCTCATGTAGTAACCTTGTATTAGGCATGTCATTCTTGAAAAATGCTGAAGGGAAGTTATGCTGAGTGATGACATTCATTTCCTGGTGGTCGTTCTGATATATGTCAGAAGCTATGGAGAGAAGCAATAGAAAAAGAAATTTGAGTCTTGAGAAAGATATAAATAGGAGGTAAAAATATATTCAAGGAATAAGAATGAGAAGTACAGGTTTTCATCATTGTCTCCATTTCTGTTGTAAATATTTCTGTCAATGAGCCCTTCCATAGTTGTATTCAAATACAGTGGTGTATTGTGAGTTGAGACATTATGTGTGTCTAGAAGACTCTTTCAAAGACTATATTTAACTGTTCTCTTTTAGGTACATAAAATTTTTGTATGAAGGTTTATGTACATAAAAATCATGGGTAGGAGTTTGAGTCCCAACTGTTTACATGATCGACTGTACTTAATATTTCATTAGGAGCATGCATTAACAGTGTACTGAATATTTTAAACATATATAAATATACTTAGACATCTATCATATAGAATAAGGCATCTGACATTGATATTAGAAGTAATAGTCCAAATAAATTTACAGTCTGTGTTTCTCATGGAAATCTGACACATGGTCTGCCGTATCCTTTTCAGGATTCTAGTTCCATACTCGGAGTCGTAGTATTCCAGAATATGTTGACTAAAACCAAAAATGGTTGCTGTGTGACACACTTAATGTGGGTCAGTGTCAGTTGGAAGAGAAGCCTGAGGAGACACTGGTGAATGTATGCTCTAGTGAAGTTAGACAGGAGGAGGAAGCTAGTGGAACGGTAACCCAGAATGGTGGCTGTCGGTGACCCTAATGGAGTGCATTCCAGGTGCTGGATAACATGATTTCGGACATTGTAAGCTATGGTGCAGGGTGGAGGGTGGGAAGATGTCTGACCAGATGAGCATATGAAACTAGTATGAAGACTGCAAAGTATACCTGTAACAATAATTACAAAATAATCTATTAAAATGTACACTTCTCATATTTTTGATATTTAATTATAGAAAAGCAAATTGTTATCATTGATGTCATAGGTCATTTTGAGAATTGTATGTGATAAGAAGAAAAATAACACTAAAGCATAGAAAATGTTGAAATAAGGGAAAATAGCAAGTCGCATCACAAATTCTAATTCTTGAGCACAGGTTACCAAGGAACAGGTATCATGAGCTCAGAGCCTGCTGTAGGATTGTAGCAAATGTGCAGATAGCTTCCTACAAAGGAAAACATACGGAAGAAGGAAAAGGGAGGTGTGTTGTAAAAAAAAAAAGTTTAATCCCAATCTAGGGTTTCTACCCCACCTTTGACTATTTAGTTCCAGAATAAAAGACATACACAACCTTTATATTTATAATAACCTTAATCAGCACAAGAGCTGGGCAGGTATCTATCCTCTATGCTATTTTGTCTATTTTCCAGCCAATAATCCTATAATATAATTTGCTTTGTTTTATCTGGGCTGCTCACAACTCCACTTAGCCAAACCACGTGGCCATTATTTTAAGATTCTTACCCCATGATGCCTTCTCCTCTATTCACCTTCTTCTCTCTGCCCTCATGGTTCTCCTCCCCAAGCCCAGGAACTCGAAACCACGCCTGTCTTCTCTGCCCAGCTATTGGCTGCAACACCATTCGCCATTACAATATATAACAGCAGACCAAACCTCAACAGCGGTGAAAAGAGTTAGTGTGTCTAGTGTATTTTAAATCTCCAAGTGTTCTCGCAACACTTACTAATTTGTGATTTGTTAAAATCCTTGTTATTCGCTTTAGTCTGCGAGTTCTTTTTTACTGCTCTACCTCTTGGCTGCTCCATGTCCTGTTTCTTGGTGCACTGGCATTAGCATCATTATTGAACTCTGTACACATTCAGAAATGTAGACCTCTGCCAGAGCGGATACATCAGAATCTACATTTTCATTGCATTTCACATGCATGACTGTGCATATTAAATGTTGCTAAGTACCTTCTCTCTCGTCCTAACTTTCTCCTGTGAGAAATGTAGGATGTGGGGTGTATAAAATCAGCGTAAGACAAATGTGTATGTTCCCGTGAATGCATTCATTGCCTTTTTATCTTTCTTAAAAGTCAAATAGGAGTGGTAGTAGGATCTCTCCATTCTCTTTTCATGGAGACGGGTCAGGGATGAGGTCATGGACCATATCAGAAATATCTTAGGGGTGCTACTCACCTGTGGCGGAAGTATTCTAGCTCTCCTCTTACCCTGTACAAAGCTTGGAATTGTGTTCCTGCAGTTTATGTTGTTATATTATGACTTTAATTGATATGTATTTCATTTATTTTTATTTCAG
Seq C2 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTGGAATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097333:ENSMUST00000181767:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types