MmuINT0180006 @ mm9
Intron Retention
Gene
ENSMUSG00000071285 | Zfp87
Description
zinc finger protein 87 [Source:MGI Symbol;Acc:MGI:107768]
Coordinates
chr13:67622129-67627167:-
Coord C1 exon
chr13:67627013-67627167
Coord A exon
chr13:67622256-67627012
Coord C2 exon
chr13:67622129-67622255
Length
4757 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TTCATTTATTTTTATTTCAGGAA
3' ss Score
9.44
Exon sequences
Seq C1 exon
CAGAACTCTGGGAAATGTAGTCGTGCCCTCTGTGACGTCACAAGCAGCCGCTCTGCGAACCGCACTTCCGCATCCCGTCTGCAGACGTTTGTCTTCCCCTAAGTTAGCGGTGCTGTGTCCTGCTCCTCGCTCTCGATCGGATCTCTGACATGGAG
Seq A exon
GTTGGTCCAGGGAGCAGTGCAGCCTGAGGGAATGTGCAGGGGAGTGGTCCAGCTTGGAGGGAGCGGAGCCGAGGTGGACCAGAGGCAGGGAGAAGCCGAGTTGGTGATGCTGTGCTGCTGACCTAAGCTGGGCCAACTGAGCCTGGATGCAAATCTGGGTGGGGAGAGCAGTATGGGGGTGGCGCTGTGAGTGAAAGCTTTGTTAGGACGCGGCTGTATACGCTTCTGGGGTGGGAGAGCTGGCTCTGTAGCACAGAAATGTGGAATGGTGGAAGGTTCAGTATTGCCCCCCCGCAGGGTGGGCCGGCCCTCTCCTTGCGCCAGAGGTGTAAATGGGAGCCCACATTCCTGCTTGCCTTAGGAAGTCTGTTGGCTGTGATCACTTGGCCACTTGACTGTGGTCAGATTTCTCAGAACTTCTAGATCGAGTGGAGATCTGGCACCTCCTATTTATGGCCAGCCTAATATTCTTGGTTTGAGTTAATAGCTGCTCCTCGTTTCCAGGGACAGAGTTCTGCTAAGGAGGTTGGTGTATAGGATGTTAGTACCATTCTCTTTGGAATAAATTGTTAGGTTTTTTTTGGTGTGTTGTTTTGAATGAGAATATTTCATGGCCACCTCCGTGATCTATATCTTCACACTTAACACTCACATGTAGAGACAGTCTAATGTTCTAAAGGAGAAGGCTTATTCAGGATATTATTGATCCTACATTGTAGAGTAAAATACTAGAAAATACCGTATCCACTTATGTCAGAGATTGTGTAATGTCAGAAGCTTGGACTCCTTTTCTGAAACAAATGAGGGGGTGATGGGAGCAGAGAGATGGCCTGGAGATTATTAGTGACTTCGGGGAAAGGACTTGAGTGTCCCTGGGGAGGAGAAGTGACCTTGAATACCTAACAGTGTTTACGTTGCTCTTCAATTGTGAGCTTCTCTTCTATCTCTGGACACTGCACATCTAAACCTCCCTTAACAACTACTCTATCACTGCCCCGACTGTGGCACTCAGGTTCCCTGTTGCTCCCTGAACATTTGCCAGTTTATCCACGTCAGAAAGATTGAAAGGTGAATTTGAAGAGCTTTTGCTCAGTTAGGGTCCCTTGCCCATAATAGACTCCTTGGCCTGTCTCTTGTATAGTTTTGTAGTTCACAACACTTTAAGTCAAATCAAGTGTTTGTGTGGCATTAAAGCCTATTATTCATAAGGAACATGGGTTTTAAGCCACCTTCAGTATGAATATTTCTGTGGACTATGTAACTGTTATGTAAAAGACAGAGACTTCCTAGTTAATGTCACTGGCCTACAGGACAAGAACAGCATTGTGTTTTCCATTATCTAAAGTGGGAAGAGTACACTACCTTGTGAACCAAAAGTGGTTTCCTAAGAAGTAGGCATGAAGCAGAGGCATGCTGTCCTGTAACTTACAGACCTTTCCAGTATATATACTTTAAACACACCTGTGATTGAAAGAAACCAAACCAAACCAAAACTGAAGCCTCTTCTTGGAGCATCCTTGTTATCTCTGCATTGTGAAGTGAAGGCGGGGGATTAGGACTTCAAGGTCATCTTCCATATTATAGATTACTCAAGATGAACTTAAGCTAAGTACGATTCTGTGTAAAAATTATTAAAGGTTTTAAAAAACAGTTCATGGATACACTATTTCTGATGGCTTCTGTCACTTGGCTTAGTACCAGCCTGACAGAATTCCGTCTAACTGACATGGCTCACATTTAAAACATATACTTGAGAAGGTTTATTGACTGTATTTGATGTGTACTTTAAAAATCTCCTGCTCACATGCTTCTGTTAAAGGCGTTAAATTTTGGTGATCAGATAGATAGTCCTCTGCATTACTGTGTGTGTAGGGACTTTACGCTTTGTCTTGCTTGAAGATTCCTCCACATTTGCAGGGAATGTTTATTTTCTCTGATTGTTCATTTGTATTAGTTTCTGTTGGGACCTCTTGATGTGTCTTCTGGTTTTCCTGGAATTCTTCCCATTTGTGCTTCTTAAACATTCAGTCTGGGACTTGAGTCATTCATTCCCCATTTCCCTCTTTAATCCTTGACTGGTGCAGCCTCCATGATATACACTTCCCTCTTAGTCCTCACTGCACAGGTTCAGCTATGTGAGGGATGTTTCTTTACCTTTAGCCTGAACGGAATTCCAGTCCCACACACGGATAATGGCAACCGCATCCTCCACTGCCCTTCACAGGTGTGCCATCCAGCCACGAAACCAAACTGCTAAATTGAGACTTCTTCCTCCTCATTGGGGAGGAGTCTAATATTTCATGGTTTCCATTCCTGACCCCTTTCTTTTTATTTTTGTTTTTGTTTTTCTGAGTGACCATCTGAGGGAAGGAATTAATGGGTTTTTGGTTTGGTTTGGTTTGGTTTTTGGTTTTTTTTCTCATGTAGTAACCTTGTATTAGGCATGTCATTCTTGAAAAATGCTGAAGGGAAGTTATGCTGAGTGATGACATTCATTTCCTGGTGGTCGTTCTGATATATGTCAGAAGCTATGGAGAGAAGCAATAGAAAAAGAAATTTGAGTCTTGAGAAAGATATAAATAGGAGGTAAAAATATATTCAAGGAATAAGAATGAGAAGTACAGGTTTTCATCATTGTCTCCATTTCTGTTGTAAATATTTCTGTCAATGAGCCCTTCCATAGTTGTATTCAAATACAGTGGTGTATTGTGAGTTGAGACATTATGTGTGTCTAGAAGACTCTTTCAAAGACTATATTTAACTGTTCTCTTTTAGGTACATAAAATTTTTGTATGAAGGTTTATGTACATAAAAATCATGGGTAGGAGTTTGAGTCCCAACTGTTTACATGATCGACTGTACTTAATATTTCATTAGGAGCATGCATTAACAGTGTACTGAATATTTTAAACATATATAAATATACTTAGACATCTATCATATAGAATAAGGCATCTGACATTGATATTAGAAGTAATAGTCCAAATAAATTTACAGTCTGTGTTTCTCATGGAAATCTGACACATGGTCTGCCGTATCCTTTTCAGGATTCTAGTTCCATACTCGGAGTCGTAGTATTCCAGAATATGTTGACTAAAACCAAAAATGGTTGCTGTGTGACACACTTAATGTGGGTCAGTGTCAGTTGGAAGAGAAGCCTGAGGAGACACTGGTGAATGTATGCTCTAGTGAAGTTAGACAGGAGGAGGAAGCTAGTGGAACGGTAACCCAGAATGGTGGCTGTCGGTGACCCTAATGGAGTGCATTCCAGGTGCTGGATAACATGATTTCGGACATTGTAAGCTATGGTGCAGGGTGGAGGGTGGGAAGATGTCTGACCAGATGAGCATATGAAACTAGTATGAAGACTGCAAAGTATACCTGTAACAATAATTACAAAATAATCTATTAAAATGTACACTTCTCATATTTTTGATATTTAATTATAGAAAAGCAAATTGTTATCATTGATGTCATAGGTCATTTTGAGAATTGTATGTGATAAGAAGAAAAATAACACTAAAGCATAGAAAATGTTGAAATAAGGGAAAATAGCAAGTCGCATCACAAATTCTAATTCTTGAGCACAGGTTACCAAGGAACAGGTATCATGAGCTCAGAGCCTGCTGTAGGATTGTAGCAAATGTGCAGATAGCTTCCTACAAAGGAAAACATACGGAAGAAGGAAAAGGGAGGTGTGTTGTAAAAAAAAAAAGTTTAATCCCAATCTAGGGTTTCTACCCCACCTTTGACTATTTAGTTCCAGAATAAAAGACATACACAACCTTTATATTTATAATAACCTTAATCAGCACAAGAGCTGGGCAGGTATCTATCCTCTATGCTATTTTGTCTATTTTCCAGCCAATAATCCTATAATATAATTTGCTTTGTTTTATCTGGGCTGCTCACAACTCCACTTAGCCAAACCACGTGGCCATTATTTTAAGATTCTTACCCCATGATGCCTTCTCCTCTATTCACCTTCTTCTCTCTGCCCTCATGGTTCTCCTCCCCAAGCCCAGGAACTCGAAACCACGCCTGTCTTCTCTGCCCAGCTATTGGCTGCAACACCATTCGCCATTACAATATATAACAGCAGACCAAACCTCAACAGCGGTGAAAAGAGTTAGTGTGTCTAGTGTATTTTAAATCTCCAAGTGTTCTCGCAACACTTACTAATTTGTGATTTGTTAAAATCCTTGTTATTCGCTTTAGTCTGCGAGTTCTTTTTTACTGCTCTACCTCTTGGCTGCTCCATGTCCTGTTTCTTGGTGCACTGGCATTAGCATCATTATTGAACTCTGTACACATTCAGAAATGTAGACCTCTGCCAGAGCGGATACATCAGAATCTACATTTTCATTGCATTTCACATGCATGACTGTGCATATTAAATGTTGCTAAGTACCTTCTCTCTCGTCCTAACTTTCTCCTGTGAGAAATGTAGGATGTGGGGTGTATAAAATCAGCGTAAGACAAATGTGTATGTTCCCGTGAATGCATTCATTGCCTTTTTATCTTTCTTAAAAGTCAAATAGGAGTGGTAGTAGGATCTCTCCATTCTCTTTTCATGGAGACGGGTCAGGGATGAGGTCATGGACCATATCAGAAATATCTTAGGGGTGCTACTCACCTGTGGCGGAAGTATTCTAGCTCTCCTCTTACCCTGTACAAAGCTTGGAATTGTGTTCCTGCAGTTTATGTTGTTATATTATGACTTTAATTGATATGTATTTCATTTATTTTTATTTCAG
Seq C2 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTGGAATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071285-Zfp87:NM_133228:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=91.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: