MmuINT0180454 @ mm10
Intron Retention
Gene
ENSMUSG00000043872 | Zmym1
Description
zinc finger, MYM domain containing 1 [Source:MGI Symbol;Acc:MGI:1915560]
Coordinates
chr4:127054208-127059031:-
Coord C1 exon
chr4:127058793-127059031
Coord A exon
chr4:127054383-127058792
Coord C2 exon
chr4:127054208-127054382
Length
4410 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CATTTATTGTTTGTTTTTAGAGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CTCCACAGTTGACGGTCTTCTCTCCTCTCACCTGACTTGAATAAAATGCTTCCTGCAGTTCCAGGCACAGCTGTTCGACTCTCCTGTGCCAAATGTAAAAGAGTTTTTCAGGAGGGACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCAAGACTATGCATTGATGGGTACCCGTCACCTGCTGTGTCTCCAGCTCCTCTCAAAAGGATGTGCTTAAATTGCTCAAG
Seq A exon
GTATGGAAGTCTAAGCAAGGCCTTTTATTTTGCTGCATAGATCTTTGGTCAGAGTCTTGGTTATCATTTTATATGCTTTGGTCTCCTCTGAAGATGGAAACCATAGGTAAATGAAAGAACTTGCTCCTGCTTTCAGTTCCTTTAAGATCACTCAGAAGTAGTTTTGATTGTTGAAGGGTTTACACAGATTACATGGAAGGGTGGAGAAGCATTGAGACCCTCTTTGTTAGAGTTTTGTTAAATAAATGTGAGACTTGAGAGCATCGAATAGGATGGTTTCTATGCTCAGAACGTGGATAACGTGTGGGTTTTGGTTTGGGGTTGGTTTGTTTGGTTTTGGTTTTTTTGAGTCAGGGACTGACTCAAGATGGTTTTCTCATGTTTACTCCCAGTTCCCTTGGAGGGATTTTTTGTTTTGAGTTAGGGTCTCAAATGTATGTATGTAGCGAGGAGTTCACTGTGGAGAGCAGGTTGGAGTTGAACTCAGAGGTACTCCTGTCTCTGCCTTCCAAGTGCTGAGACTACAGGAGTGTTCACCACACTGGACTACCTACACTTACTAATAGGCTCGCAGACCTTTGCTTCGATCCTTATTTGGCTGGCACTTCCAATGCTGTCTTTTGTTTCAGGTTCTATTTTCTTGATCTCTACCTAACTTTATCTCTTCTTTTGTTTTCTTTTTTGGTTGGTTGGTTGGTTGGTTTTTTGTTTTTTGTTTTTGTTTTTTTTTTTTTCGAGACAGGGTTTTTCTGTGTAGCCCTGGCTGTCCTGAACTCACTTTGTAGACCAGGCTGGCCTCGGACTCAGAAATCCACCTACCTCTACCTCTGCCTCTCGGGTACTAGGATTAAAGGCGTGCACCACCACGCCCTGCTTCTTTTTTTTTTTTTTTTAAGTTTCTTTATATTATTTTATGTATGAGTGTTTTCTCTACTTGTATGTGTGTGTACTACATACATACGCTGTGCCTGCAGAGGGCCTTTGATCCCTTGAAACTGCCATTACAGGTAGTTGTGAGCCACTGTGTGCGTTGCTGGAAATTAAACACAGGTCCTCTGCAAGAGCAGTTGTGAGCACTGTCCCACCTTTCTGGCCCTCTCTCTTGTTTTCTCCAATTCTACAGTACTATACTATGTCCAGCTTTCCTTTTGGCTATAAGTTATAGGGCATTCTCTTCAGTCTACTTTCTCTTTCTGCAGAGTCCTAAACCTGGAAGGGACATTAGAGATCACCCAGTGCAGACCTTTTCTTTTGCTTTTGAAAAAACTGAGGCCCTGAGGAATTAAGGCACTGTGTTGCTATGGTTAGCATATACGCACTACATTTCTTCAGCCCCAGCTTTGCTACATGTCACAGGCGTTGAAAAGACTCATGCAAGAAAGAATTTGCTGTGTAAGTTGTTCTCATATGGAGTAACAATCAGGTATGATGAGCAGAAATAGACAACCTTGGCTTCCTCTGGAATAAATATATATATATATATATATATTGGTTCAAAGGTGATAGTCATCTTAAACTGGGAGAGGCCACCATTTATTCAGAATAACAACATGTTTCTATTGGCACTTTTTAGATCTATTTTATTTTGCATGTATGGGTATTTTGCCTGCATGTTTATATGTGTACCACATGCCTGCCTGGGGAAGTTGGAATAAGACGTTCTATTTTCTGGAGCTGGAGTTATGGATGGTTGTAAACCTCCATGTGGATGCTAGGAACTGGGCCCAGGTCCTCTGGAAGAGTAGCAGTGCTTTGAACCTCTGAGCCATCTCTGCAGCCCCTTCATTGAGACTTTTAAAAAGTTTCACATTCACAACATCTTTTGGTTTTCTCAGACAGGGTTTCTCTGTGTAGTTCTGGCTGTCCTGGGCTTTGCTCTACAGATCAGGCTGGCCTCAAACTCACAGAGATCCTCCTGCCTCTGCCTCTTGAGTGCTGGGATTAAACACATGCACCACTGCCTGGCTGAAGTCCCAAAATTTTAAGTAATTTTTAAGGCTTCTTTTTTTAGCAATGATTTAATATCTTTTTTTTTTCCTGGTACTGGTATTTTATTTCTTTGTGTACATTAGGCCATGAATTTGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCATCACCCGCTTCAGGAAGCTGTCCCTGCTCTTTGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTAAACCTGCTTGTTGACAGTGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTATTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAATGCCATGTTTCCTAAAAGGCCTAGAGAACATAATACCGGGTGCCTCTCCTCTTTCCCTTTGTGTTCGTCATTTTGGCGAATTACTGGAAGATGGCTGCGGCGGCCGCTGATTTAATATCTTTAACTAATACTTACTGTTTTTGTTTAATGAAGCAAAATGAAGGATAACTTTGAAGATGACATTTAAAATATTAGAAAGGGGAGACTTTTTATTGAAAACTATTAAGATATGTTTAAGAAACATTTCCACACTTTAGTATTGGAATTAAAAAGAAATTCCGAAGACAAATCATTCCGGTCCAAAATAGGCCGGTCCAGTAATGTTTAATTATTTTCAGGCAGCCGGGAGTGATGGCACAGGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCTAGCCTGATTTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAATGGAAGCTGTGGAACTTTCCATTGGGTCTTAACACCTTTACTAATTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTTATACACTTATCTACCACAGAAAAATTTAAAAATCCATGACAGAGTTAGAACTAGAACGCATTTTAAAAATCAGCCACCAGTCTCATCAGAAAAGCTGTCAAGTGTTAAGAATTGATCAAGCTAGAGATGGCAGATACAGGTTTCCTAAAATTTCTCATTTTTCTTTAATGATTTATTTTTATGTACATTGGTGTTTTGCCTGCATCTTCGTCTGTGCGAAGGCGTGTGAGGGTGTCAGGTTGTGGCGGTTGAACCCAGGCCCTCTGGAAGAGCAGTCAGTGCTCTCAACAGCTGAGCCTTCTCTCCAGCCCCTTCTCACTCTTCCTTAAAAGTTTAGCAGTAAATACTGTGAGTTGTTTCCCTTGAAATGGCAGCCTTTATTTTCCTGAAAATAGCCCCTTCTAAACAATAGTTTAGCATATAGTCTCATAGAAATATAATTCATAAAAAAGATGGCTAAGGTATAACTCAGATTTTCTGTGTAGTCTGTCTAGAGACAGTGGTCCACCACTGATAAACATTTCAGTGCTTTATGCCCTGTCCCCTTTAATCCCTGTGCTGGTTAGTTTTTCTCAGCTTGACACGAAAGGTTCATCAGAAGGAAAGAACCTTGATTGAGAAAATGCCTCCATCATTGTCCTGTAGACAAGGACGTTTTCTTGATCCATGATTGATGTGGGAGGGCCCGCCTCACTGTGAGTGGTACCGCCCTTGGTCTGTGTTACCAAACTATGGTCAGCCAGCCAGGAAGCAGATTCCTCTGTGGTCTCAGTTCCTGCCCTTCCTTCAGTGGTAGATTATGACCTGGGAGTTGTGAGAGAACATAAACCCTTTCCTGGTCACGGTTAGTGGACCCGACCCACAGCAGTAGAAGCAAACTAGGACAGTCACGCAAATATTCAAGTTTATTTATTCTTTTACCTGCTTTTAGTCTGTGTATTAAGGGCATGCATTGCCCTTGGAGTCCAGAAGAGGGCACTGGATCCCCTGGAACAAGAATTACAGACAGTTGTGAGCTGCCATGTGGGTGCTAGAAATTGTCAAGGTTCAAATTAAAATAACTTGAAAATGTTGTTTTATTGACAGCATCCTTAATTTCTGGAACTAAATTGTTTTGTTTTGCAGTAAAAACATGGCAGAAGGATCCCAAGAGCTCACTGCCCAACCAGCATAGCCCATACAGTGATTCTTGCTCCCAATTCAGTGAGAAACTGGGTCAGGACAATACAGAGAGCAAGAGGGAAAAATGCCCAACGCCTTGCTCTGGGCCCCTCATGTGTACACACAGAAACTCATAAGTTACTTTATATATTTATTGTTCTATTAACAAGCATTTATTGTTTGTTTTTAG
Seq C2 exon
AGACATTTTAAGTCTAAAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTACATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCATGTGTCAGAAGACATCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043872:ENSMUST00000106102:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=63.1),PF064679=zf-FCS=PU(27.3=18.5)
A:
NA
C2:
PF064679=zf-FCS=PD(70.5=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types