MmuINT0180505 @ mm9
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98613612-98615561:-
Coord C1 exon
chrX:98615485-98615561
Coord A exon
chrX:98614292-98615484
Coord C2 exon
chrX:98613612-98614291
Length
1193 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CCCCCTCTTCCGATCTGCAGCCC
3' ss Score
9.44
Exon sequences
Seq C1 exon
CGGGTAGAGTGGGCTCTGGAGATAGGGCGGGCACGGGTGTGACGGGGCCAGGCTCTTGAGCCAGGTAAGGAAAGCAG
Seq A exon
GTGCGTAGATGTGGGGTTTTTCTTCCTTTTTTTGTGTATTTAGTGTACTAGGCCCTTCGGTGGAGAGGGGGCGCCGCCTTCCCCGGGGGCGGGCTCCAAAGCTCCAGAGGCTATCTTTTCCTCAACTAACGGGGCCCCGGGCGGGGGCTCACGCTCCATCCCCAGTGACGGCACTCCACTCCGCAATTTCCAGGCGGCCACTGGGCTGGGAGTCTCGCGCCGGGGGCCGGCGCTGTCTCGCGAGCCCCCTCCTCCAGCCAGCCAATGGGATTGGTCGCTGGCACCGCCCGCCTGCCTGGTGCAGAGCGCTCAGCGCTGCAAGCGGCGCTGCCATTTAAAGGGGCCGCGACCCCTGTCCCGGCTGCTAGGGAGGGAGGTGGAGAAGGAGCGCGGGGCCGTTGCTGTCTGCAGTTCTAGGCTTGTAGCGGTTACTCTAACCCTGCCTCAGGTAGGGGTCGGGTCTGTTCAAGCCGAACCGAACCTGCAGGCGGGATCTCGCAGTAGCCGGGAGGGGGGTTTGAGCAGGAATCGTAGCTCCAAAATGTCTTCCTGTAAATGCCTGAGGTGGGGGGTGGGCAACAGGAGAAGGGAAGGACTAGGGGTGCAGTAGGAAAGGGGGGACGGGGCTGAGGAAGTGGTCCACCCTGAAAGGTAACCGAGTGGGGGGGAGACGGTTAGGAAGAGCAGTTTGTGGGGGCGGGGAAGGGCTGAGAGAGGACGGGCTCCGCGGGGAGGGGCGCTGGGGCTGGAGAGGATGGGGAGAGACTGGAGACCTGGGGGGCTTTTGGGGGGGAGTGAGAAGGGACCAGGGGCTGAGGTCGCCGGAGCGGGAAAGGTTTCTGGCTGCGGCAGGCACGGGAAAATGTGAGGGGGCGTTGAGTCTGAGGTGGGGGGTGTGTGAGAGGTAGGGAGGAAGGAGCTACGAGTCTCCGTGGGGGGTGTCGGGCGGGTTAGAGACCAACTGCCTGGCGAGTGTGGGCACGGGGCCAGGGCAGGGAACGCCACTCCCCACAGAGGGCGCTGTATTGGGGGGGGAGTGGACATTGAGCCTGAAGCCTGTGGAAATGCCTATCGGCTGTGGGGGGCGGCTGCTAATGAGAAATCCAAGTGGATGACGGACGGGGTGTGTCCCACAGCCGACATAAGAAATTCAGGCTAAGACCACCTCTACTGCCCCCTCTTCCGATCTGCAG
Seq C2 exon
CCCATACCCAGCCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAAGTCGAGGATGGGCTCCCCCAGGTCCGTCTCCATCCTCTGGAGCCCTGGACCTGCTTGATACCCCTTCTGGCCTGGAGAAGGACCCTGGAGGAGTTCTGGATGGAGCCACTGAGCTACTGGGGCTGGGGGGGCTACTCTATAAAGCCCCTTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGAACCCTTGCATGGGATTCGGGGGAGCAGACCCTAGAGCCTGGACCAGGGTGTCAAACCCCTGAGGTGATGCCACCTGATCCAGGGGCTGGGGCTAGTCCCCCTTCACCTGAGGGGCTACTAGAACCTTTGGCTCCAGATTCTCCAATAATCCTGGAGTCTCCTCATATTGAAGAGGAGATACCCCCCTTAGCTACAAGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCATACCCAAGGGCAGCCACAGAGCCCCAATGCACCCCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGCATCAACAGTTCTCAGAGCAAACCTGGGGTATGTACCCCTACTGCACATCCTTCGTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-Zmym3:NM_019831:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAGGTAAGGAAAGCAG
R:
AAGGGTTCCCTCAGGACCATG
Band lengths:
346-1539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: