BtaINT0164743 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84689654-84691207:+
Coord C1 exon
chrX:84689654-84689774
Coord A exon
chrX:84689775-84690521
Coord C2 exon
chrX:84690522-84691207
Length
747 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTTCTACCCTTAATCTACAGCCC
3' ss Score
8.59
Exon sequences
Seq C1 exon
CTGCCATTTAAAGGGGCCGCGACCCCTGTCCCGGCTGCTAGGGAGGGAGGTGGAGAAGGAGCGCGGGGCCGTCGCTGACTGCAGTTCTAGGCTTGTAGCGGTTACACTAACCCTGCCGCAG
Seq A exon
GTAGGGGTCGGGCCTGAATAAGCCGAACCGAACCTGCAAGCAGGAGCTCGCAGTAGCCGGGAGGGGGGTCTGAAGAGAGACCGTAGCTCCAAAATGTCTTCCTGTAAATGCCTGCGGTGGGGGGTGGGCAACAGGAGAAGAAGGACCAGGGGAGCAATAGGAAAGGGGGACTGGGCTTGAGGAAGTGGGAGACCCTGAAAGGTAACTGGGGGGAGGGGTTAGGAAAGGCAGTTGGGGGGGGCGAGGAAAGGGCTGAGGGACGACTATGCAACGCGGGGAGGGGGGGTGGGGCCAGACAGGGTGGGTAAAGACTGGGGAACTGGGGGGCTCTTGGAGAGAGGGGAGGGGAGATAGAAACTGAGACCGCGGGGGCGGGAAAGGCTCCTGGTGGCTACGGCCCTGGAAGACTCTAAGGGGGCGTTCAGCCGGAGTTGGGGGGGGAGTGAAAGGTGAAGGGGGAGGGGAACTGGGAGTTGCAATGGGGTGGCGGGGGCTAGGCGGGCGGGTGGAGCGCCTGAAGAGTGGGGGTACAGGGCCAAGGCGGGGAACGCTTCTTCCCACAGGGGGCGCTGTACTGGGGGGGGGAGTGGTCATTCGCACTAAAACCTGTGCTAATGTTTGTCGATAGTGGTGGGGGCGGTTCAAGAGAAATCCAAGTGGATGGTGGGGTGTGTCCCAGAGCCTATATAAGAAGGAATTCTGGCGAAGACCACCTCTTCTGCCCTCTTTTCTACCCTTAATCTACAG
Seq C2 exon
CCCACATCCAGTCATCCTCATGGATCCCAGTGATTTCCCCAGTCCGTTTGACCCATTGACCCTGCCAGAGAAGCCCTTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTACTGGAATCTCAGACTGCCCCAACTCGAGGATGGGCCCCCCCTGGCCCTTCTCCATCCTCGGGAGCCCTGGACCTGCTTGATACCCCTGCTGGCCTGGAGAAAGACCCTGGAGTCCTGGATGGAGCCACTGAGCTGCTGGGGCTGGGGGGGCTACTCTATAAAGCCCCCTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGGACCCTTGCATGGGATGCAAGCGATCAGACCCTAGAGCCTGGACCAGGGGGCAGGACCCCTGAGGTGGTGCCACCTGACCCAGGGGCTGGGGCAAATCCCTCTTCACCTGAGGGGCTACTAGAGCCTTTGGCTCCAGATTCTCCAATAACTCTGCAATCCCCACATATTGAAGAGGAGGAGACCACCTCCATAGCTACAGGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCTTCCCCAAGGGCAACCACAGAGCCCAAATGGCCCCCCCAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGAGCCCTAGCCCCCCTGCACACCCTTCCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGCTGACTGCAGTTCTAG
R:
GGGGGAGAGGGGGCTTTATAG
Band lengths:
349-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]