HsaINT0186021 @ hg19
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70472439-70474038:-
Coord C1 exon
chrX:70473879-70474038
Coord A exon
chrX:70473125-70473878
Coord C2 exon
chrX:70472439-70473124
Length
754 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTTCTACTCCTAATCTGCAGTAC
3' ss Score
5.88
Exon sequences
Seq C1 exon
CGCCCGCCTGGTGCAGAGCGCTGGGCGCTGCGAGCGGCGCTGCCATTTAAAGGGGCCGCGACCCCTGTCCCGGCTGCTAGGGAGGGAGGTAGAGAAGGAGCGCGGGGCCGTCGCTGTCTGCAGTTCTAGGCTTGTAGCCTTTGCACTAACCCTGCCGCAG
Seq A exon
GTAGGGGTCGGGCCTGCTCAAGCCGAACCGAACCTGCAAGCGGGATCTTGCAGTAGCCGGGAGGCGGTGGTGGGGGGGTCTAAGGAGAGATCGTAGCTCCAAAATGTCTTCCTGTAAATGCCTGAGGTTGGGGGTGGGCAACAGGAGAAGGGAGGACTGGAGGAGCAATGGGAAAGGGGGACGGGGCTGAGGAAGTGGGCGACCTGAAAGGTAACTGGGGGGAAGGGGTTGCGAAGGGCAGTTTGTGGGGGCGGGGGAAGGGCCGAGGGAGGACCTAGCAACGCGGGGAGGGGGGGTGGGGCCAGACAGGGTGGGTAAAGACTGGGGAGCTGGGGGGCTCCTGCAGAGTGGGGAGGGAATAGAAACTGAGATCGCGGGGGCGGGAAAGGCTCCTGGTGGCGACGGCCTTAGGAGACTCTAAGGGGGCGTTCAGCCTGAGTTGCGGGGGGTAAAAGGTAAGGGGGGAAGGGAATGGGAGTTGCAGTCGAGTAGGGGGGTGGGCGGGTAGAACGACCGACTGCCTGGCCAGTGTGGGCACGGGGCCAGGGCGGGGAACGCCTCTCCCCACTGGGGGCGCTGTATTGGGGGGAGTGGTCATTAGGACTAAAGCCTTCGGAAATGCTTGTAGATTGTGGTGGTGGGGGCTGCTCATGAGAAATCCAAGTGGATGATGGGGTGTGTCTCAGAGCCTATATAAGAAGGAATTCAGGCTAAGACCACCTCTACTGCCCCCTCTTCTACTCCTAATCTGCAG
Seq C2 exon
TACATATCCAGCCATACTCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTACCAGTAGACATGGAATTTGGAGAGGATCTACTGGAATCCCAGACTGCCCCAACTCGAGGATGGGCCCCCCCTGGCCCTTCTCCATCCTCGGGAGCCCTGGACCTGCTTGATACCCCTGCTGGCCTGGAAAAAGACCCTGGAGTCCTGGATGGAGCCACTGAGTTGCTGGGGCTGGGGGGGCTGCTCTATAAAGCCCCCTCTCCCCCGGAGGTGGACCACGGTCCTGAGGGAACCCTGGCATGGGATGCAGGAGATCAGACCCTAGAGCCTGGACCAGGGGGCCAGACCCCTGAGGTGGTACCACCTGATCCAGGGGCTGGGGCAAATTCCTGTTCACCTGAGGGGCTACTAGAGCCTTTGGCTCCAGATTCTCCAATAACACTGCAGTCCCCACATATTGAAGAGGAGGAGACCACCTCCATAGCTACTGCAAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCTTCCCCAAGGGCAGCCACAGAGCCCAAATGCCCCGCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGAATCAACAGTTCTCAGACCAAACCTGGGGGCTCTAGCCCCCCTGCACATCCTTCCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-ZMYM3:NM_201599:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGCTGTCTGCAGTTCTAG
R:
GGGGGAGAGGGGGCTTTATAG
Band lengths:
349-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)