MmuINT0180482 @ mm9
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98613612-98615253:-
Coord C1 exon
chrX:98615037-98615253
Coord A exon
chrX:98614292-98615036
Coord C2 exon
chrX:98613612-98614291
Length
745 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCCCCTCTTCCGATCTGCAGCCC
3' ss Score
9.44
Exon sequences
Seq C1 exon
GCTGTCTCGCGAGCCCCCTCCTCCAGCCAGCCAATGGGATTGGTCGCTGGCACCGCCCGCCTGCCTGGTGCAGAGCGCTCAGCGCTGCAAGCGGCGCTGCCATTTAAAGGGGCCGCGACCCCTGTCCCGGCTGCTAGGGAGGGAGGTGGAGAAGGAGCGCGGGGCCGTTGCTGTCTGCAGTTCTAGGCTTGTAGCGGTTACTCTAACCCTGCCTCAG
Seq A exon
GTAGGGGTCGGGTCTGTTCAAGCCGAACCGAACCTGCAGGCGGGATCTCGCAGTAGCCGGGAGGGGGGTTTGAGCAGGAATCGTAGCTCCAAAATGTCTTCCTGTAAATGCCTGAGGTGGGGGGTGGGCAACAGGAGAAGGGAAGGACTAGGGGTGCAGTAGGAAAGGGGGGACGGGGCTGAGGAAGTGGTCCACCCTGAAAGGTAACCGAGTGGGGGGGAGACGGTTAGGAAGAGCAGTTTGTGGGGGCGGGGAAGGGCTGAGAGAGGACGGGCTCCGCGGGGAGGGGCGCTGGGGCTGGAGAGGATGGGGAGAGACTGGAGACCTGGGGGGCTTTTGGGGGGGAGTGAGAAGGGACCAGGGGCTGAGGTCGCCGGAGCGGGAAAGGTTTCTGGCTGCGGCAGGCACGGGAAAATGTGAGGGGGCGTTGAGTCTGAGGTGGGGGGTGTGTGAGAGGTAGGGAGGAAGGAGCTACGAGTCTCCGTGGGGGGTGTCGGGCGGGTTAGAGACCAACTGCCTGGCGAGTGTGGGCACGGGGCCAGGGCAGGGAACGCCACTCCCCACAGAGGGCGCTGTATTGGGGGGGGAGTGGACATTGAGCCTGAAGCCTGTGGAAATGCCTATCGGCTGTGGGGGGCGGCTGCTAATGAGAAATCCAAGTGGATGACGGACGGGGTGTGTCCCACAGCCGACATAAGAAATTCAGGCTAAGACCACCTCTACTGCCCCCTCTTCCGATCTGCAG
Seq C2 exon
CCCATACCCAGCCATGGACCCCAGTGATTTCCCCAGTCCATTTGACCCATTGACCCTGCCAGAGAAGCCCCTGGCTGGAGACCTTCCAGTAGACATGGAATTTGGAGAGGATCTGCTGGAATCTCAGACTGCCCCAAGTCGAGGATGGGCTCCCCCAGGTCCGTCTCCATCCTCTGGAGCCCTGGACCTGCTTGATACCCCTTCTGGCCTGGAGAAGGACCCTGGAGGAGTTCTGGATGGAGCCACTGAGCTACTGGGGCTGGGGGGGCTACTCTATAAAGCCCCTTCTCCCCCAGAGGTGGACCATGGTCCTGAGGGAACCCTTGCATGGGATTCGGGGGAGCAGACCCTAGAGCCTGGACCAGGGTGTCAAACCCCTGAGGTGATGCCACCTGATCCAGGGGCTGGGGCTAGTCCCCCTTCACCTGAGGGGCTACTAGAACCTTTGGCTCCAGATTCTCCAATAATCCTGGAGTCTCCTCATATTGAAGAGGAGATACCCCCCTTAGCTACAAGGAGAAGGGGCTCCCCTGGGCAGGAGGAGGAGCATACCCAAGGGCAGCCACAGAGCCCCAATGCACCCCCTAGCCCTTCAGTGGGAGAGACTCTGGGGGATGGCATCAACAGTTCTCAGAGCAAACCTGGGGTATGTACCCCTACTGCACATCCTTCGTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-Zmym3:NM_001177985:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTGCAGTTCTAGGCTT
R:
CTGGGGGAGAAGGGGCTTTAT
Band lengths:
344-1089
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: