MmuINT1003301 @ mm10
Intron Retention
Gene
ENSMUSG00000097345 | AA543186
Description
expressed sequence AA543186 [Source:MGI Symbol;Acc:MGI:3035233]
Coordinates
chr2:25327450-25332571:-
Coord C1 exon
chr2:25332148-25332571
Coord A exon
chr2:25328722-25332147
Coord C2 exon
chr2:25327450-25328721
Length
3426 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
TGTGTATCGGTGTTTTGCAGGCA
3' ss Score
8.14
Exon sequences
Seq C1 exon
GCGCGCATCCGCTCCATTGCAGGCGTCCTGCAGACTCCCTGTTGGGGGCGGACTGACTACGGTTTGGAGAAGTGTTCTTTGTTGCAGTTACGTCTGGCTTGAGTTGTGGACTATCACCCTTGCCGGAGTCCTGCGCTCGATCTCGGGGAGCGGGCATCACCCTGGCGCGCCTGGAGGTGAAACGCAAAACTCCTGACCGGAGGAAGGGACGGCCCTGCTGAGGCTGAGTCCTGGGGTGGCTCTGCGCCCTGAGGCCGCGGCCTGGCCTTTCTAGTCGCTCCGGCCTGGGAGCGACCCTTTCTGCGACCATTCCGCTCCTAGCCCTACCTACGTACTCGGCAACGGGTTTAAAACGACCTCACTTTTCCGTGCGCGTGGTTCCCTCGAGGAAAACATGCAAAACGACAAAACTGCCCACTGTCCG
Seq A exon
GTGGGTGAAACTGCTGCTTCCCAACTTACTTGTGGTATTTCTGAGCATTTGGAGAGTTCCCTACGTTGCGATCATTTAGTTTGAATCTCCTACAGAAGACCTACCTGATCCCGCGCCCCTTCCCTACATTTTTTTTTTTTTTTTTTTGTGGGGTTGGGGGAGGTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGGTTAAAGGCGTTCGCCACCACACCCGGCCCCTTCCCTACTTTTAAGTCCTCACAGATCGCTATTACAATAGTGCTCTCAAATGTAGGTTTTCGGAACCATGGCAGATGGTGCAATGACTTTGAGGTCTGCATATCTTCCAAAATGAAGGCGGAGTTCTTGTTGGCTATTCACGCCAACTCAAGCCAGGTCTACACATTCCCACGTTCTGCTACTGCTTATGACCATGAGGTGGCAGTTGGCATACCAAAGGGCTAGTTAGAGCTCTACGTTAAAAAAAAAAATAAACCTTTGAGGGAAGAAATAGGAAGAGTTTGTTAGACCAAAACAAAATCTGGAGCTGAAAATCTTCCAATTCAAGCCAGGCAAGAATGATAAGCCACTGTGGGACAAATCCTTGTCCAAGTTCAGAATCTAGCGACATTGAAGGTCTTGAAGGGGTTGAAAGAGGAAAACCAAGTCAGCCACAGAGAGCAATGATGAAGTAACCTTGCCCTTCTCATAATTAAAGCAAAGCAACACCTGTCTGTGCCCATATACAGACTCTTAACACTGCAGAGGTAAGGAAGTTACATAGTTCCAAGCCAGCCTGGGCCCCAGAGTGAGTGAAGTCTTGTCTAACAGTACTCAAACAATGGGAAGCTATACCTTTAAGCACACAGAAATTCATTATAGGCCATATATAAGACCTAAAAGAAGTCGAAATAAATTTGGAAAGATTTTGGTCACATAACATATTTTTAGCCATATTTGGACTAGAAAAGTGAGAAATCAATAAATATTTGAAAAGCGTAAACACCACTCTAAATAAGAGGGTTTTGGGTTTTTTTTAAATCACAAACTAAATTAGAAAATAATGTTGAATCAAATGAAAAGGGGGGCTGGAAAGGTGGCTCATTGGTTTGAAGGAGTGTACTATTGTAGAGGACAAGGGTTCCCACATCAGGCACCTTACAACCACCTGTAACTCTAGACCAAGGGTGCCTCTGTGAGCATCTTTATGCAAATGTACATACACACATAAAATTAAAAGTAATATATTTTTGAAAAATTTGAAACTTTGGTTATAAACTTTTACAATAAAAGTGATGGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAAGTGATGGAGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTCACTGCTCTTCCAGAGATGCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTAGTGTGTCTGAAGGCAGCTACAGTATACTCATATACATAAAATAAATAAACAATTATTTAAAAAAAAAGTGATGGAAAGCCTTAACTGTTTCCACATTAGCAGACTGGAGGAAGAGCTAGCTGTAGCCCCACCTGTGCTTTCAATACTCAGGGGGCTGACACTGGAGGATTTCAAGTTCAAAGTTAGAACTGAATGAGACCCTGTTGGGGAGGATGGAGAAGAAAGGAGGAAAAGAGGGAGAAAGGGGGAGGGAAGAGAGAAATAGATTGTAAGAGACATAAGTCTTTTATATGTCAGATCTTATATGTGGCCTATGATGAACACTTGTGCATTTGAAGGTATAGCTTCCTGTTGTTTGGGTACTGTGTGATAGTTTCAGTTAGGCCAAATGGTTGCCAGCACTGAACAGCAAGATAGAAGACAGTGTACTCATAAATCAAGAGGCTTAGGTAAAATAGAAAAACTCTTAAGTTACAAGGTGGTAAAACCAACTCAAGAAGTGGGAAATGGAGAAATACCTATAAAGAAATTTACTTTAAATCTGTGGCACACCCTACAATCCCAACACACTGGAGGTTAAGGCAGAGGGATTTCACGGTCAGAATTGGTGGTTGAGTTGGGAGAATTTTTGTGAGCTTGAGGATAATCTAAGCTACACAGTGAGTTTAAGGCCAGTTTGAAATGTGTAGTAAAGCACCGTCTCAAACAAAACCACCCACCCACCAACAAAAGGGTCCGAACCGGCCGGGCGTGGTGGCGCACGCCTCTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACACAGTGGGTTCCAGGACAGCCAGGGCTACTCAGAGAAACCCTCTCTCGAGAAAACCAAAAAAAAAAAAAAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAGGTCTGAACCGTATATGTCTCCCTTCTCATAAGGCCACACCAGCATTCTTCCAGCTACTTGAGCCTATGAACTTTGGAGTTATTCTTGGGCCCTCATCTTTCTTTTAGGACAGGGCTCCTCTGTCCCTGGCTGTCCTGGAACTACAGAGCAGGCCAGCCTCAAACTCAGGGAAATCTACCTGCCTTTGCCTCTTGAGTGCTGGGATTAAAAAAGTGTGGAGTTTTATCTAAACAACAAAAGTAATTATATTGAGTCATGGTCCTTAACACTTATTTAGACTGGATTTAACATTAGAGAATTCATCTTGTGTAAAACCCTAGGACTATAAAGAACAGGTGAGGTCTTTAAACCTCAATCCTTAGTCAGGATAAATGAATTCATATTTGTAGGAACTACATGTAATTACTCTGAATGGGTAAGATATGTATTCTCTTTATAAATGTAAAAAGTAGAGTAAAACCTTTGCTCAGACCTCAATCTCTCTCTCTTTCTCTCTGTCTGCCTGTCTGTCTGTCTGTCTGTCTGTCTCCACTCAGCTCTGTAATGACAGAAGATATGTGCTGTCATGCCTGGGTTTTCATATAGGTCTGTGTTATGGAGTTCCCGACCCCTGAAAAAAGCTTAGAGACTGAATCCAATTGTAATTAAAAGATTGATTGATTATGGCTGGCTGAACAACAATCTCTTGAGCCAAACCTAAAACTAACATGAGAAGGTGGATGAAGAAAGGATCGTTTTTATTATTTTATTTTTATTTTATTTTTTTGAAATTTTTATTTTATGTGTATCGGTGTTTTGCAG
Seq C2 exon
GCATGTATGCATACCTTTTGTATGAAGTATCCATGAAGGCCAGAAGAGGGCACTGTTGCCACTGGGACCAGAGTGACCAATTGTTAGTCATGTAGTGTTCGTACTGGGATTCGAGCCTGGAAGAGCAGCCAGTGTTAATCACGCAGCCATCTCTTCAGCCCCCAAGGGAAGGACTTTTAAGCCTGAAAAACTGCAGGAAACCCTCGAGTGTCTGCATAAGCAACTCAAGAGCTGTTTTGCTCTGCCGCATAAGCAAGTTACAGCAGCAAACAAGTAGTTGGTCATAACATAACACGTAGCTGGTCACTGCCGTAGGTGTGTGTGGGGTTGGGGGCATGTCACTGAGTCCAGGTTACTGGGAATTTATCTTCTAGGGACTGGAGTCAAAAAGACAAAGAGCTAGTGGGTACCAAGCTGGATGCCTAGCATAAAATGGAGTTACAGTAGCCATCACGTTGGGGACCCCTCAGATACACAGTGCTTGCTCTTTACCGCTGAACCCCTCACACCTCAATCATAATATACAAAAAGGATTTTTGTTCTTTTTATTGTTTTTGTTGAGACACGGTCTTGTTGCATGGATCTCTTGATTTTTGTTTCTTTGAAGGAAAAATATTTAGCTGAACCCAGGTGTAGTGGTGCACGCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTGGATCTCAGTGAGTTCTAGGCCAGCCTGGTCTAAAGAGAAAGTTCCAAACCCAGCCAGAACTACAGCTCTGTCTCCAAAAAAGAAAATTCGATTGAAAGACACAAATTTAAGTATACATTTATTTAACAAATGGAAAATCAAAGCTAGAAATCCAAAGAGGTTAGAGTAGGTTCCACAAGCTGGAGGAGGGGAGCAACAAAGTCCTGTAGGGTGGATTTTTAAAAGACTTTATGAGGTAGGTAGCAGTAGCATATTTGTAGGGTAAGGTGACCCTTTTTCTCTTTATAAGTGTGTTAGGGGATTTCCTCACCCCTTCAAGTCTCATAGCCAGTTTTTAGGAGAGTAAAGAATAAAACTTGAGCAGTGCCATCTTTGCAAGCACTGGGTCAAAGTCTTCCGGAGACTGACCTCATGGTTAAATACAATAGAATTTGTGACCTTTGTTACAAAAAGAATGAATTCTATTGACTGATAAACAGAGCTTGGGGCCTAAGAGCAGTGGTTCTCAACCCTGAAGAAGGCTTGGGGCTATACTGGGATCCCAAATACCCAGTGTAGTCGACATCTGGCTAATAAAGACTTTCTATTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097345:ENSMUST00000180841:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types