MmuINT1003465 @ mm10
Intron Retention
Gene
ENSMUSG00000050296 | Abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:MGI Symbol;Acc:MGI:2676312]
Coordinates
chr1:71349017-71351805:-
Coord C1 exon
chr1:71351708-71351805
Coord A exon
chr1:71349203-71351707
Coord C2 exon
chr1:71349017-71349202
Length
2505 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
ATTCTCTCACATACTTTTAGCTG
3' ss Score
6.58
Exon sequences
Seq C1 exon
CCACAGTACCTCCAAGACCAAGCTATGATTTGGAAGGAACAGGCACAGAAAATTTCAATGGTAGCCAATTGCTTACACGCATCCTTGGTTTGGAAAAG
Seq A exon
GTAACTTCATTTATTTTTGCAATGGACAAACATATTTTATATTGGTGGAGGTATCTCCCAAGCAGGAAGAGGTTTACAGAATATCTCCAATTTAAGTACTATCTCAGGCAGGTTCTTTTCTTGGACACTTTTCAATCATAGCTTAATTTTAATTCATTGCAAATTCCTTAAGGTCTTGGGCATTTATTTACTGCCCTGGTAAGTTCCTTAATTGAACTTACAGTTTTGACTTACTAAGAAATCATGTAGTATTTGATGTGATCTTTCAATTTTATGAAGCAAGGAAATAAAAAACGAAGCTGTAAAACTGCACCTGATGCTTCATCCACACTAATACCTTTGGGCAAATTAGAGCTACAGAAATCCCCCCTAAGTAGAAATATTTTTTTGTCCTTGAAATATTTTTTCCTTAGCATATGGTAGAGAGTTTACCTATGGAGTTTTCTGTTTCCCAGAGATAAACTATTTTATGATTGCTCAGATTTAAAGATAATAAACACACTTTTATAAGAGGTATGAGCTGGCAGTCTATAAGCTCTCTTTTCTCCAGTCTCTGTCTCTGTCTCTGCCTCTGTCTCTCTCTGAGTATGTGTGTGTATAGAAGATGGATTTGAATGGCTTTAAAGAACAACAGTCACTCTGCAGGTAACTACATTCTCTATTTCTTGCTATCTTCCAGCCACCTTGGAACATATATTGATGCTATTGTGGATTAAATATGGCTTACCTGCATCATCTTGCTTTTCTCTCCCCATCTCGTCATCTCTCCCTGTTTCTCTCTCACACACTTTATCTATGTAGCAGGCATTTTTCCCATTTGTATCATAAGACATGCCCCTGACATTTATCCCCATTCCAGTAATCCTAAGCACTAATGCTCACTGTGAGTTTATTACTGACTCTTGGTTTACCATTGTACGTGACAGAGGCATCTCATTGAACTGAGTCATTTCCTATCAAACCAGATCATATAAATACGCAGAAATAGCACAATAAATGATTTTATGGAAAGGCACCATAATCAATAATTCTGCAGACCTTTCCTGTGCTGGTTGTGATAGAAGACTTTCTTACTATATTATATATAATCTAGACATTATAGTATGTGTATTCTAGAAATTGAACATTGATATTCTGTCACATTCATAATTGCCAAGGCTCCCTTGGTGACTTGGAGTTCCTAAGCATTTCCAATTAGTTCCAGCCTAAGTCCTCCCCTCACTGGGTCACAAGGAAAATCTGTACTATTCCATGATGTTTTCTTCTTGCTTCTTAGGACTTTGTATTGGATCAGACAATTTCTGTAATGAATAGAATAGAAACACTGTTCTCAAAATTACTGCTTCACTCTATTGAAACTTCCAAGGTCTCTGTTTCATATGGGATAAGAGTTTAGAATTTTGTGAGACAGCACAAAGCCGCATATTCCAGAGATGGAAGCTCCAAGTGAATTTTGTATATACGGACACATATTTTTCAAGTAGTTGGAACAAGGCAAGGATGTAAGAATTAGGATGACATATTGATGCCCGTGTCAGCAATCTCTCTAATTCCTTTCTTTCTCTTTGCTGCTTTCTGCAACCCTTGCAGGAATGAGTAGAGAAATCACTTCAGGGTGAGTTTATGTGTAATGTTAGATCAGGGCTGTGGATGAATGACCAGAAAACCTAGCACTTCCAATGCCGCCCAGATAAGTGGATCCTGTCTTGTTCCATTATGCTTAGAAGTTAAGTTGCTGGGGAAGAGAGTATAAATTTCATGATGTAAACTTAAGGGGAGAATGGAGTTAGCCATTACCTCATAGGGTCATATGAGTTAGCTACTGGAAGGAAACCCTTGAGTATTACAATTAAATGCAATTAACATTGCAAACACATAAACTATTATGGTGATCAATATCGTGGCTGGAGGAGTGTTTCTGTGGTTCTTCTGTTCTATGGAAACCATTGGCCAGTTACAATGATTCCATTAGGAAAGTTATTTCCCATTATTGCTTGCTGTAATTAGCTTGACTTATCTATTTGAATAACATTTTCATATTTTTCCTTTTTTATCTTTCTGCACATGAGATTGAAAGGAAATGTAAGCCATCTGCCCACTTTCGGTCCTAAGAAAGACTATGACCAATTTTATAAGAAACAACACAGAGTTAACACACTTGAACTTATGCCACACAAAACGCAGGAAAAATTAATATGTTTTTTTCTTCACAAAGATTTTGCCAGAAAACATTGGGTGTGTTTATGTTCTCTGGTCAAACATAAGAAGTAGATTCAGTTATATAAATGAAATGTGAACCATTCAAATAAAACCAGGGCAAGAGTGTATACCTTCATTCATAGTCTTCCTCTGCAGCTCCACACAGGCAAAATTGTGTGTTATTGTTTCAAAAGGCAGAACTTTAAAGATCGCTGTTGGGAAGATAGGCCAGTGACCTTAAAGATGAAAATCTTTTCCTTTCTATGTTTTCTAATATCACTTCCCAATTCTCTCACATACTTTTAG
Seq C2 exon
CTGCTGAAGCAAAATTCAACTCCAGAAGACATACGAAGAGAGCTGTGTGAGAGCTACCCTGGGTACACTGCGGACTATGCCTTCTCTTGGGTCACCCTAGGAAAAAACGTTTTTAACAAATTTTGCCTTTCGAACATGACACTTTTAGAGTCTTCACTCCAGGAACTAAAATATCAAGTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050296:ENSMUST00000087268:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types