MmuINT1003824 @ mm10
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80345513-80347625:-
Coord C1 exon
chr10:80347557-80347625
Coord A exon
chr10:80345704-80347556
Coord C2 exon
chr10:80345513-80345703
Length
1853 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GTTACCTCAATTGTTTTTAGAGA
3' ss Score
5.63
Exon sequences
Seq C1 exon
ATCCTCTAGGCACCGCAGCCCGCAGCTCTGGCAGATGAGACCATGACCCACGTGTTGGCAGGAGGCCAG
Seq A exon
GTCAGCCGCCCAGCGCCTGCCACGGGGTGGGGTTGGGGGTGGGGAGGAGGTCCCTTAGGCTATGGGGTACCTGGGAGCACAGCGGTCCCCAGAGGCTGGGGGGCAGCTGGGAGGGGGACATCCATTCCACCCTGAGTTTCTGGATGAGCCTCCATTAATTATCCCTCTACAGGCTCTCAGAGACTCAGGGATGGGGTTCCGCGGGTTTTCACTGCACAGATGGGGAAACCGAGGCCTGGAGAAATGGAATGGTTGGTTCCTGGCCACCCAGGAAGGTAGATGAAAGGGGTGACTAAACTTGCAGCCACCTAAAAACTGTCCTTAAAGGATTCCTTGTGCATTATAAAAGAACACACTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGGGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAAAATCTTTAAAAAAAAACAAAAACAAAATAAAAGAACACATTGTCTATAGGAAGAACTGATTAAGGTGGGTGTGTGGCAGTCCAGGACTAGCAACTTTGTCCCAGGAGGCTAAGGGAGGAGGATTTTTCAGAGTTTGAGCCTAGCCTGAGCTACAGATCAAGACTCCCATCTCAAAAGGAAAGCAGAAGCCTGTCCTAGAGCAAAAGCCCAGTGCCCACTGTCCAGGAGCTAGTAGGGGAGGCAGGAAGGTCACGAGTTCAAGGTTATCCTTAGCTACTCAGGAAGTTTAAGACCAACCTGGGCTACAAGACCCTATCTAAAAAAAAAATAAAAAAGAAAAAAAGAAAGCTGGGCGTGGTGATGCACGCCTTTAATCCCAGCACTCGAGAGGAAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAGAAAAAAAGAAAAGCACGTGTGCAAATCTTTAGTCCCAGCACCTGGGAGGCAGAGGCAGGCGGGCCTCTGTGAGTTGACAGACCAGCCTGGGCCACATAGAGAGTTTTGGGACAGCCTGGATTACATAGCGAGAGTGTCTCAAATAAACACAGGAGGAGGTGGAGAGATGCTCAGTGTTCAAGATCTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCCTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAGTGTTCAAGATCTTACCTTGCTCCTTAAGAGAACCCACAATTGGTTCCAAGCACCCATGCCAAGTTGGGAGCAACTGTAGCTCAGCTCAGCGAAGGGAGTCAATGCTGCTGGCATCTTCCAGCGCTGCACTGTGTGCATGTGTGTGCACGCGTGTGTGTGTGCATGCATGCATGTACACATGTATGTATATGTATGCTGTTTTCAAGACACAGTGGTCCTGGCTGTCCTGAAATTCACTCTGTAAACCAGGCTGGCCTCGAACTCAGATCTGCCTGTCTCCCAAGTGCTGGATTAAAGGAGCGTGCCCTTCTACAAATAACATTAATTTTAAAACCAAATAACAACACATACAGTTCCTAGTTCCCCACCCTGTGTCTGACCTGAGCCTATAACGCCCTCAAGGCTTTCCAGAGATGGGGCAAGGCTGCTGTTACCTCAATTGTTTTTAG
Seq C2 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAACACACAGCCAGCCAGGGCTGAGATGGCAATTCACCCTGACCCTGCTCTTCACTGCCTCTTGGTAACCCTGTGCTCCCTCAAACCCCGCCTCTTCCCGCTTCTTCCGTTCTTGCTGTGGACTCTCCTGAGCTGTGATTTGAGGGGTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822:ENSMUST00000105352:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTAGGCACCGCAGC
R:
CAGCACCCCTCAAATCACAGC
Band lengths:
255-2108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types