RnoINT0013685 @ rn6
Intron Retention
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12230180-12231737:+
Coord C1 exon
chr7:12230180-12230248
Coord A exon
chr7:12230249-12231543
Coord C2 exon
chr7:12231544-12231737
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TTTACCTCATTTCTTTTTAGAGA
3' ss Score
9.35
Exon sequences
Seq C1 exon
ACCCTCTGGGCACCGCAGCCCGCACTCCTGGCTGATGAGACCATGACGCACATGTTGGCAGGAGGCCAG
Seq A exon
GTCAGCCTTCCCCGCGCCTGCCACGGGGATTCCCTTAGGTTATGGGGTATCTGGGAGTACAAGCAGTCTCCAGATGCTGGGAGGGAGACACCCATTCTACCCCGAATTTCTGAATGAGCCTCCACTGGTTGCCCCTCTACAGGGTCTCGGAGACTCACGGACCGAGTTCCGCGAGTTTTCACTGCACAGATGAGGAACCTGAGGCCTGGAAAAACGGAATGGTCGGTTCCTGGCCACCCAGGAAGGTAAATGAGAGGGGCGAATAAACTTGTAGCCAACTAAACAGTACCCTTCAAGGACTCCTTCAATGGCTGGCATTAGGCACCTACTGTGTACATCATGAAAGAGCACAGTATCTATAATACCAGATTAAGATGGGTGTGTGGCAGTCCAGGCAGGTCTGAGAGAGTCTTGTCACAGGTGGCTGAGGCAGGAGGATTTTTTCAGAGGTTGAGCCTAGCCTGAGCTACAGATCAAGACCCCCATCTCAAAAGAAAAGCAGAAGATGCCTGCCTGTCCTAGAGCAAATGCCCAGTGCCTATTGTCCTGCAACTAGTAGGGGAGGCAGGAAGGTCATGAGTTCAAGGTCGTCCTTAGCTACCAAGGAAGTTTCAGATCAGTCTGGGCTACAAGACCTTGTCTCAAAAAAATTAATAATAATTAAAAAAAAAACACAGGCCTGTGGAGCAGAGGCAGGTGGGTCTCTGTGAATTAGCGACCGACCAGCCTGGGGTACATAGGGAGTTTTGGGACAGCCTGGGCTACACAGTGAGAAAGTGTCTCAAATCTCGAGTAAACACAGGAGGAGCTGGAGAGATCTCTGGGTTCAAGATGTCACCTTGCTCTTTAAGAGAACCCACGACTGGTTCCAAGCACCCATGCCGTGTTGTGAGCAACTGGAACTCAGCTTAGCTCAAAGGGAGTCAGTGCACCTGGCATCTTGTCGCGCTGCCCTACGCGCACGTGAGTGTACATAAGTGTGTGTGTGTGTAAGTATGTGTGTAAGTATGTGTGTGTGCGCGTGTAAGTGTGCGTGTGTGTAAGTGTGCGTGTGTGTGTATGCTGTTTTCAAGACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAGTTCACTCTATAGACCAGGCTGTCCTCGAACTCAGATCTGCCTGTATCTGTCTCACAAGTGTACCGTTTACAACACATAAAGTCCCTAGTCCCACACCATGTACCTGACCTGAGCTTTAACCCTCTCAAGGCTTTCCGGAGATGGGGCGAGACTGCTGTTACCTCATTTTACCTCATTTCTTTTTAG
Seq C2 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAAGACCACACAGTCAGCCAGGGCTGAGATGGCAGTTCACTCCGATTCTGCTGATCACTGCCTCTTGGGAACCCAGTGCTCCCTCAGACCCCGCCTCTTCCCGCCTCTTCTGTTCTTGCTGTGGATTCTCCTGAGCTGTGATTTGAGGGGTGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787:ENSRNOT00000060811:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTGGCTGATGAGACCAT
R:
CTGAGCAGCACCCCTCAAATC
Band lengths:
240-1535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]