MmuINT1006007 @ mm10
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25933591-25934335:-
Coord C1 exon
chr2:25934220-25934335
Coord A exon
chr2:25933710-25934219
Coord C2 exon
chr2:25933591-25933709
Length
510 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TTTTGATCTGGTTTTCTTAGGTC
3' ss Score
8.47
Exon sequences
Seq C1 exon
AGTTGAATCACTGGAAGCTTTACCTATCCTGAGCCGCAACCCCAGTCGGAGCACAGACCGAGACTGGGAGACTGCATCAGCAGCTTCCTCTTTGGCCTCTGTGGCTGAGTACACAG
Seq A exon
GTAACAGCCACACAACATCTTTAGGGTATATTGCCCACAGAGGCACTTGGGTATAGATAGCACTCTTTAAAATATATCTTTATTTTGGCCTAAAATGTTTTGTTTTATTTTTTTTTAATTCAATATATACTCAGTGTCAGAGCTATCTCTAACTGCTGGCTGTCCACAGCAGGGACACAGCAGAGACCCTGATCTTATCTCTATTTGTCCCGTGGGCAATAATAACTCCTTACTCTTTTGAGAGCAGAGATAAAGCAGGATCATACATCCTGGTCACTTTCCGGTTTCTGGGTTTGTAATTTGTATAGTAAAGAGACTCAGGTCAGAAAGTAGCAACAAGTACTTTAATTTTTTTTTTTTTAAATTCTTCTGAGTAGATTAGAAGAGGTCTTTATGGTCTGTTTTCAGAAATGCATAATTGTATTTTGTTTCTGAGAAAAGTGTTGCTCTTTTGTGTGTATTTGTGGCTTGTTGTTAATAATTTTGCAATTTTTGATCTGGTTTTCTTAG
Seq C2 exon
GTCCTAAACTCTTTAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAATGCCATCTCCCACTGCTGTCTGGCTGGAAAAGTGAATGAGCCTCACAAGAATTCAATATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933:ENSMUST00000114167:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAATCACTGGAAGCTTTACCT
R:
CCAATATTGAATTCTTGTGAGGCTCA
Band lengths:
233-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types