RnoINT0028765 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3380794-3381560:-
Coord C1 exon
chr3:3381445-3381560
Coord A exon
chr3:3380913-3381444
Coord C2 exon
chr3:3380794-3380912
Length
532 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTGGTTTTGGTTTTCTTAGGTC
3' ss Score
8.73
Exon sequences
Seq C1 exon
AGTTGAATCACTGGAAGCCTTACCTATCCTGAGTCGCAACCCCAGTCGGAGCACAGACCGAGACTGGGAGACTGCATCGGCAGCTTCCTCTTTGGCCTCTGTGGCCGAGTACACAG
Seq A exon
GTAACAGCCACACAAGACAACGTCGTTAGGGTATATTGCCCACAGAGGTACTCAGGTATAACACTCTTTAAAATACATCTTTATTTTGGCCTAAAAGGTTTTTTTGTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTAATTAAATATTTACTCTGTCAGAGCTGTCCACAGCAAGGACACGGTAGAGATCCTGATCCGACTTCACATTTGTCCCGTGGGCAATATAATTAATGCCAACTTCCTGCTATTTTGAGAGCAGAGATAAAGCAGGATCTGCATCTGGTCACTTTCCGGTTTCTGGGTTTGTAATATGTTTGTAGAGAGACACGAGTCAGAGAGTAGCAACGATTACTTTAATCTTTTTTTTTTTTTTTTTTATTCTTTTGAGTAGATTTGAAGAGTTCTTTATGGTCTATTTTCAGAAATGCATAATTGTCCATAATCTAAGCTTTTTGTATTTTGCTTCTGTGTGTGTTTGTGGCCTATGTTAATAATTTTGTAATTTTTGATCTGGTTTTGGTTTTCTTAG
Seq C2 exon
GTCCTAAACTGTTTAAGGAGCCCAGTAGCAAATCAAACAAACCAATTATTCACAACGCCATCTCCCACTGCTGTCTGGCTGGAAAAGTGAATGAACCTCACAAGAATTCAATATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=NA C2=0.183
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCACTGGAAGCCTTACCT
R:
CTCCAATATTGAATTCTTGTGAGGT
Band lengths:
232-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]