MmuINT1006221 @ mm10
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21992872-21993660:-
Coord C1 exon
chr9:21993538-21993660
Coord A exon
chr9:21993025-21993537
Coord C2 exon
chr9:21992872-21993024
Length
513 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GTCCCCCACCCTCAAAGCAGACC
3' ss Score
5.2
Exon sequences
Seq C1 exon
AACCAGCTGCAGTATCTGGAGGAGTCTGCGATCAGAGATCGCAAGAAGCGCGAGCATTACATAACTGACTGCAAGAAGCGGGCAGAAGAGAAGAAACTTCAGACAGAGCGTATGGAGCGCAAG
Seq A exon
GTGTGCACATCTAAGGGTGTAGGGCTTTGCCAGCTCAAACCAGAGGGTCCCAGCCCTCACCTGGTACACACATCCTGACCTAGAGACTTCCCAACCATGCCAGTTGTCCTAACCCCAACCCCTCCCTTACTCTGCCCCCATTTGACCCAATGATTCCTCTCACAATCTCACCTCAGCCTCTTTCCTGGGATAGGCCGTGGCCTCCAGATCTGCCCTGGACTATCTGACCCTATACTCATCCTTCCCATTTAATTTAGGCCCTTTTGTTCTACATCTGAGTGGGGGGTCTAGCCCATCCCCTCCGGAGACTACTCCCTTCTACCATCCTGCCTTCTTACCCTGGTTCTGAAACCACCTATCTGACTCCTACCTGGACGCCTGTATCTAGTCCCAAGCCTTTGTCCTGTTCCCCACCATCTAAGCTAAGCGAGCTCCTCTCCTGGCCTCTGCCCCAAGGCCTTATCTAGAGCTGATTTTGACGGTGCCCTTGACTGTCCCCCACCCTCAAAGCAG
Seq C2 exon
ACCCACCGAGACCACGTATTGCTGCAGTCAGAAGATACAATACAGGACCACCAGCGCCACAGGGAGGAGGAGCTGAGGCAGCGCTGGAGCATGTACCAGATGGAAGTGATGTTTGGCAAGGTCAAGGATGCCACTGGAGTAGCTGAATCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632:ENSMUST00000044926:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.532
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTATCTGGAGGAGTCTG
R:
ATGCGATTCAGCTACTCCAGTG
Band lengths:
270-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types