RnoINT0030557 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23004030-23004810:-
Coord C1 exon
chr8:23004688-23004810
Coord A exon
chr8:23004183-23004687
Coord C2 exon
chr8:23004030-23004182
Length
505 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
TGTCCCCCACTCTCAAGCAGACC
3' ss Score
5.83
Exon sequences
Seq C1 exon
AACCAGCTGCAGTATCTGGAGGAGACTGCGATCAGAGACCGCAAGAAGCGTGACCATTACATAACTGACTGCAAGAAGCGGGCGGAAGAGAAGAAACTCCAGACGGAGCGTATGGAGCGCAAG
Seq A exon
GTGTGCATACCTAAGCGGGTAGGGCTTTGCCAGTTCAAACCAGAGGGTCCTAGTCCCCGCTTTGTGTACACATCCTGAGGTAGAGGCTTCCCTACACCTGGCGTCTATCCTAACCCCTCCCCTCCCTGACTCCGCCCCCATTTGGCACAATGGTTCCTCTCACAACCTCACCTCAGCCTCTTTTCCAGGGACAAGCCATGGGCTCCAGTTCTGCCCTGAACTATCTGACCCTGTTCTCATCCTTCCCCATTTGATTTAGGCCCCTGTTCTATATCTGAGTGGGGGTCTAGCTCACCCCTTCCAGAGACTACTCCTTCTATGACTCTGGCTCCTTACCTGGTTCTGAGACCACCTATCTGACTCCTACCTGGATGCCTGAACCTGGCCCCAAGCCTTTGTCCTGTTCCCCACAATCTAAGCTAAGTCGAATCGAGGCCCCTGCCCCAAGCCCTTTATCTGGAGTTGATGTTGACAGTTCCCTTGACTGTCCCCCACTCTCAAGCAG
Seq C2 exon
ACCCACCGAGACCACGTACTCCTGCAGTCAGAAGATACAATACAGGACCACCAACGCCACAAGGAGCAGGAGCTGCGGCAGCGCTGGAGCATGTACCAGATGGAAGTGATGTTTGGCAAGGTCAAAGATGCCACTGGAGTAGCTGAGTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTATCTGGAGGAGACT
R:
ATGCGACTCAGCTACTCCAGT
Band lengths:
270-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]