MmuINT1007283 @ mm10
Intron Retention
Gene
ENSMUSG00000037242 | Clic4
Description
chloride intracellular channel 4 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1352754]
Coordinates
chr4:135213969-135218689:-
Coord C1 exon
chr4:135218508-135218689
Coord A exon
chr4:135217266-135218507
Coord C2 exon
chr4:135213969-135217265
Length
1242 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GGATCTATATTGCATTTCAGGTG
3' ss Score
7.11
Exon sequences
Seq C1 exon
CGCTGGAGAGGGGGCTCTTGAAAACGCTGCAGAAACTGGATGAGTACCTCAACTCTCCCCTCCCCGACGAAATCGACGAGAACAGCATGGAGGACATCAAATTTTCCACACGTCGGTTTCTGGACGGCGATGAGATGACATTAGCAGACTGTAACCTGCTGCCCAAGCTCCACATTGTCAAG
Seq A exon
GTAGGCCCACCGGGAGCACGGTGCCGCCGGGAGCGGTGCTCCCTCACCAGAGCCGTTCTCTACCCCAGCCAGAGTCAGCTCAGTAAGTGGATCCTAGAGCTAACTAAGTAGAAAATCATGTTTATAAGTCAGCTGTATTGGGTACCTTAATCGTAGCGCTCAGGAGTCGGGTAGAGGCAGGAAGACCAAGATTTCCCTCTCAAGGAATCTCAAGCCAGACTGAGCTACATGAAACCCTGACCCAGGGAGAAAAAAATATGAGACCTGAGCAAGAAATTTTTTTCTTCTCCTGTGGCTGAATTAATAGGGATATAATAGATAAATATAATAATAATATATTATATTATATATTACATTTTATATTATATCATATTATATACTATATTATATATAATATAATAATAATAATTATAATAGTAGACAATAGATAATTGTGAACTGGGCTGACACTGTCTAATTCTGTGTGGTGACCTTTCAAGGCCACAATGTTAATTCTGTGACAAACCAAGCTTAATGCAATACTAATGGGCATTTGTTGCATGTAAAGATCTGAGACAAGAAAAGATGGTTTTAGAAGCTGGTGTGTTGGGGTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTATTGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGATACAGTGTACTCATACATAAAATAAATCTTTTTAAAAAAGAAGAAGCTGGCATGCATTTGGGAGGTGGAGGCAGATGAAGTTCTATTGAAAAGCAGCCCAAACTAAAAAAGGAAGAAAACAAACTTAAAATAGTCTGTTTTTAGACAAATACTTACCCAGTGATTAGACTCAGCCATCTCCCTGTGCCCAAAGCTGGCTTCCAGAGCCGCTGTTGTTTCCCAGTACCTGGAGTAGTGTGCCGTCCTAGTCTACACTCAATGTAGCTCGCTCTCTGTGTGAGTGTGTTCACCTTGGTAACCTGGGAGCCCAGAAATGGGTGCCTTTACGCCCTCGGGGTTACAGGCAGTTGTGAGCTGCCCAACATGGGTGCTGGGAACCAAACGCCAGTCCTGGAAGAGCTGGCCCATAGAATATGTTAATAAAGGTTTCCAGAATTAATAGTCTCTCCAGTCAGACATGCCTCATGTGGGGACCTGGAAGATAGGTGTAACTCTGGATCTATATTGCATTTCAG
Seq C2 exon
GTGGTGGCCAAAAAATACCGCAACTTTGATATTCCTAAAGGAATGACAGGCATCTGGAGGTACCTGACAAACGCCTACAGCAGGGACGAGTTCACCAACACCTGTCCCAGCGACAAGGAGGTGGAAATCGCGTACAGCGATGTCGCCAAGAGACTTACCAAGTAGACAGCACTTTCGAGAGAGATGCCTTCCGATCCCCCGAGAATCCGCTTTCCTAACAGACTGCTCCGCCTCCTAAAGTAGAAGTGTATTTTGCATGAACACACAGTTACTCAAGACTAGGAGTAAGGCTAGACAGAGTAGGCCTCTCCAGTACACACTCCTGAGCAGTATTATTCTAAACTCCTCTACCCAGCCCACCTACCCTACCCTGCCCTGCCCATCTGCTGCCCTCCAGTTTGGAGGCACTTCGCCACAAGCGTGTCACCCAAGAGGCAGTTTGCTGTCACTCTGGAGCCCCGACCATCACGTCCCTTCACTGTGTAGATGGCAGAACTTGAGGTGCTATGTTCCACCATTAGAAAAGTCGCCTGCGACATCAGTGGACCCCATGTTGCTGTGTGCATGGTATAGGAACATTTATGTACTGGGGGAGTTGTAATATTGTGTAAGGAGTCTGGAAGGATTACTACTGTGTCAGACGTGCTGTTTCAGAGTAGTCTGTTCTGGAGTGTCTGAGTGAGAAGGCCACTTCTGTAGAGACACTGGTTTCTAGGTAGACATTTAATTTTGACTAAAATGTGTCATTTGTATAAATTGTAACATCCGATAGATACTACATAGAAAATGAAGGACTGAGGGGTTAGGAAGGCATTTTCAAAATGACAAGAGAAGGTTGGGTGGGGTCTCTGTCTATCTTGCCTGCTGTGAGGGTATCACCCAGGCCCACTTATCCATCTACAGCGAGTAGTATGGCGGCCTTCCTTGTAACAGGCTTTTTCTTTTCTCTCTTCGTGGTGCTTGGGATGGAACCCAGGGCTTTGTTTAGGCCTGACAAGGCTCTGCCCCTGAGCTGTGCCAAGCCCACCTCCCTCTGTGTACAAAGCTCCTTTCTTGGGTGACCAACATCTTCCTGTCTTTGAGCAACCAAGGCCAGCATGCGAGCCACCCAGAAGTTAATTAAACCAGGTTCATCGGGAGTTTGCTGAAATGTTAAGCATACTCTGTTCTAGAGAGGGAGTGAAGAAGGGGCCATCTTAAACTCCCGTGAGGCCCAGGCCTCGTGCTCCTGCCCCACCTCCATGTGCATCAGACTGGGTGAGAGGTCCTTCACTTGTCTTGGGATAAATTGTAGTTGTCTTAGTGAGTGTGTATTTCCACAGTTTTGCCTCATGTCAGTCCCCACGCGGAAGGATAGCCTTCTGTGTTCTTCTTGCCTTTGTTTTGAGACAGGATGTTACTCTGAAACCCTGGTTGGCCTGGAACCTGATAGGTGACCAAGCCAGCCTCAAACTCGTGGCAGCCCTCTTGCATTTGCCTCCTGAATTGGAGCTAGGATTCAGCCTGCACCACCACGGCTGGCTTGTTTTCTCATCTCTAAAAACAAAGTCTAAGCTAAAAGTTGTTTGCAGTCTAACAAAGGGGAATGAGCTTTGTAAAACCAGAGGCCCCTCCCGCCCAGACAAAATGGCCTTTCTCAGTAGTACTCCAGAGCCTGCTGTGACTTTGTGTACTGTGCTACATTTTTTTTTAGTGATCTTTTTAAAAACATGTTCAAGAAATGCTCTTTCTTAAAGTCGTCTCACTCCACAGTTCGCTGCTTTAAAGTGGCCATGCTTTCCCCTACGCTGTGCTGACACTTAAAATAAATGCCAGCTTTATGGAACCATTCTGACTCATGGCAGCTCCCTTTGAAAACTTACCAATACTTCACCTAGCACGGGGGTCAGGGAGAGCTTGACAGTGGTCCCCGTGGCTCAGGGAGATGCCGTGGCCACAGCTTTCACCCCATTGCTAATCAGGGTGTGAGCACCCTTTATATGCAAACTGGGTGGTGGTCTGTCTGGTTCCAGTGGGAGGTACCATCTCTTCTCCTTTGAGAAATGCCCCTGCAGTGTCTCCGTGGGTGGGGTGGGGTTGAGCTTTGACGATTCCAGAGAAGAGGTCTCTGTTCTTCTGTGAGGGGCCAAGCGAGGGCTCCTGGGTCAGAGCTGTACTCACAGCAGAGGGTGTGCAGACAGGCCTTAGTGGGTGTGAGGTGCCCACGATTGGGTGTTTATTCTCTTTGGCTTCCTAAATTGCCTCTTGGTTGCTCTTGCCGTCTCTGGATATCCAAGGAAAGTCTGTCTAGGTTTTGGCAAGGGTAGAATTGTTTTCCTTTATAGAGAGACACAGTTTTGTCAAGGAAGTGAAAACGGATTCGAGATTGGCAGATGGACAGAAGCTTTAAAAAGGAAGAGCCCACAGCAAGCACTCTGACCCTGAGCCGAGATCATGGCTTACAGTCTTGAAATGTGAACTGTGATGTCTCCATGCGGCTGATGCAGGCCATGGGCCGACATCTACAGAGTGGCTCCTCCCTCGCTCTTGCTTAGCCTCCGATCTGTATAAGCCCTCCACCTTGGAGCCGGGATTTTGAGTGGAGTCTGCCTATTTTCCAGTGGATACTAAGAAACTATTAAACAGTGGGAAGCCTGGCTGTTTTAAGTACCGTCGCTTCCTTTTTGATATAGATACAGACTTTGAATACAATGCAGTTTCCTCAGTAACATTAGCTTTCGTAGCAGTTTATACCATAAGATGTTCTGACTGGTTTGTACACTAGGTGGGTCAGCTAGTAGAATTTAGGCATTTATACTTTTCCTGAGTTATACTCCCAGAACCTCCTCAGAGTTGCATGTAGATAGCATTTATTTCTGCATATTTAAAAAAAAAAAAACCCATTTAGGAAATATCTACAAAGAAGAAATGAAAAATAGTAATTATTTTTTCATGAAGATTTTGGTCCACACCTCATTGAGTTGTAATGGATTCTCCAGTTTCTTGAGTTGGCAATAATCAACATTTGGTTTGGAGAGCGAGCATGAGAGAGCGTTTGTTAGTGAAACTCACAGACTTCTAAAAGTTCATTGCTACAGTTATCAAAGTGGGGGAAACTAAAATTACCTTATCAAGGAAAAAATATTAAGTCACAAGCCATATACATTTAGCTCCCAAGCCATAATGCCGAACAGCTTTGGAGTATCGTACAGAAAGCTCATTACAAAATGCTTGCGTTTTCTTTTCTCTGGAACATCAACACCAGTGTATTGCTGGCAGCTATTGTATTAAAAAAATAAATATATTTTCACTATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037242:ENSMUST00000037099:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(65.2=100)
A:
NA
C2:
PF134101=GST_C_2=PD(25.0=41.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCAGAAACTGGATGAGT
R:
GGGATCGGAAGGCATCTCTCT
Band lengths:
356-1598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types