MmuINT1008032 @ mm10
Intron Retention
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34802305-34802871:-
Coord C1 exon
chr17:34802671-34802871
Coord A exon
chr17:34802475-34802670
Coord C2 exon
chr17:34802305-34802474
Length
196 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAC
5' ss Score
2.13
3' ss Seq
GCCTTGCCCCTCCTTCTCAGATC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GACAGCCTGGTTGCAGGCCAATGGAAAGACATGATTGACTACATGCTCCAGGGAGTGGAGAAGCAAAGGGATGGCAAAGACGAAGAGCGGCTCCACGAGGGGCACGTGCACATGTCGGTGGTGGACCTGTTCATCGGCGGCACCGAGACCACGGCTACCACGCTCTCCTGGGCTGTGGCTTTCCTGCTTCACCACCCTGAG
Seq A exon
GTGCACTGTGGGAAGACTGCTCCTTCTGGAACCTTGATCCAGTTGCCCTGCTCTTGACTGCTTGGCCTGGGCTATGCTCACAGAGGGGGCTCTAGGGTCAGCTAGATGGCAGGAGGGAGGAGCTGCAGGCTGGGCAGCTGTGAGCCACCTGGGCAAAGTCTGGTCCCTAGAGCTCAGCCTTGCCCCTCCTTCTCAG
Seq C2 exon
ATCCAGAAGCGACTGCAGGAAGAGTTAGACCTCAAGCTGGGCCCAGGCTCCCAGCTCCTGTACAGGAACCGAATGCAGCTGCCTCTGCTCATGGCCACCATTGCCGAGGTGCTGCGTTTGCGGCCTGTGGTGCCCTTGGCCTTGCCCCATCGTGCAACTAGGGCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365:ENSMUST00000025223:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.8=100)
A:
NA
C2:
PF0006717=p450=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCAAAGGGATGGCAA
R:
CAATGGTGGCCATGAGCAGAG
Band lengths:
248-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types