GgaINT0044919 @ galGal3
Intron Retention
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24818663-24819246:-
Coord C1 exon
chr6:24819037-24819246
Coord A exon
chr6:24818833-24819036
Coord C2 exon
chr6:24818663-24818832
Length
204 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCTCCCTGCTCTTATTGCAGGTC
3' ss Score
11.38
Exon sequences
Seq C1 exon
GAAGCATTCTGTGGGGACACTGTGAGGGACCTGATGGATGCCCTCCTGCAAGTGAGGCTCAATGCTGAGAACAGCAGCCCTCTTGAGCCAGGTCTGGAGCTGACAGATGACCACCTCCTCATGACGGTGGGGGACATCTTTGGGGCTGGCGTGGAGACCACCACCACTGTGCTCAAGTGGGCTGTGCTCTACCTGCTCCACTACCCCGAG
Seq A exon
GTAGGGTCTGTGGGGTCCCTCCTGCACTAGGGCCATTGCAGAGGGCTTTGGGAAAGAGCAATGCTGGGAGAGATGTCAGGCTTTAGAGATAAGCAGTACTGAGATGCGAGAGCTTTGTTTCTGCCTTTATCTGCCAGGGTGTGCTGGAGGTGCCCCTTGCACAGAGCACCCCCCTCCCATGCTCCCTCCCTGCTCTTATTGCAG
Seq C2 exon
GTCCAGAAGAAGATCCAGGAGGAGATGGACCAGAAGATTGGCCTGGCACGTCACCCCCACCTCAGTGACCGCCCACTGCTGCCCTACCTGGAGGCTACCATCAGCGAGGTGCTGCGCATCCGGCCCGTGTCCCCCCTGCTCATCCCACATGTGTCCCTTGCTGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000013182:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.8=100)
A:
NA
C2:
PF0006717=p450=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAACAGCAGCCCTCTTG
R:
GACACATGTGGGATGAGCAGG
Band lengths:
301-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]