RnoINT0044159 @ rn6
Intron Retention
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266423745-266424438:-
Coord C1 exon
chr1:266424223-266424438
Coord A exon
chr1:266423915-266424222
Coord C2 exon
chr1:266423745-266423914
Length
308 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GACCTGGTTCTGGCCCACAGGTG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAGAAGTTCGACAGTCAGTCTATCTCCAGCCTGACGGACATTCTGATTCAAGCCAAGATGAATTCAGACAACAACAACAGCTGTGAAGGCCGGGACCCAGATGTGTTTTCAGATAGGCACATCCTTGCCACGGTGGGAGACATCTTTGGGGCGGGCATAGAGACAACTACCACTGTGCTCAAGTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG
Seq A exon
GTGAGTGTCTCCTACACTCTTGTCTTCCTGTAGAATCCAAATAGCCCCATTTGGGGGGGGGCAGGGGCAATGCCTGGATTCTTCTGTACAGAGATAACCAGAGCCCTCTCTAGCTCTCACACAAGCAGTGGCTGACTCTGGCTGTGGGTAAAAGTTGACCTATCCTCTAGAAACAAGGCCTAGGTTACAGAGCCGTCACTGGATAGAATCATTCCATGGTGTTCTGGGTATGACCACTGGGCTCTGCTAAGCCCATGTCTCTCTTAGACTTGAACAACCTGGTCATGTGACCTGGTTCTGGCCCACAG
Seq C2 exon
GTGAAGAAGAAGATCCAAAAGGAGATTGACCAGTACGTAGGCTTCAGCCGAACACCAACTTTCAATGACCGGTCTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTGCGTATCAGGCCGGTGGCTCCCATGCTCATCCCCCACAAGGCTAACGTTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035:ENSRNOT00000027160:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.3=100)
A:
NA
C2:
PF0006717=p450=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTCCAGCCTGACGGACA
R:
GTTAGCCTTGTGGGGGATGAG
Band lengths:
356-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]