MmuINT0044661 @ mm10
Intron Retention
Gene
ENSMUSG00000003555 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88586]
Coordinates
chr19:46668672-46669361:-
Coord C1 exon
chr19:46669146-46669361
Coord A exon
chr19:46668842-46669145
Coord C2 exon
chr19:46668672-46668841
Length
304 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGCCTTGTTCTGGCCCTCAGGTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG
Seq A exon
GTGAGTGTCTCCCCAACTCTTGTCTTCCTATAGAATCCAACCAGCCAACCATTATGGGGGGCAGGCAATGCCTGGAGCCTTCTGTACAGATAACTATAGCCCCACTCTGCCTCTCACACAAGCAGAGGCTGACTCTGGCTCTGGGTTAAAGTTTTCCTGTCTTCTAGAAACCAGGCCTAGGCTACAGAGCCATCACTGGATAGAATCATTCAGGCTGTTCTGGGTATGACCACTGGTCTCTGCTATGCCCATGTCTCTCTTAGACTTGAACAAGCTGGTCATATGGCCTTGTTCTGGCCCTCAG
Seq C2 exon
GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003555:ENSMUST00000026012:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.3=100)
A:
NA
C2:
PF0006717=p450=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCCAGCCTGACAGACA
R:
CTTGTGTGGGATGAGCAAGGG
Band lengths:
350-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types