DreINT0054108 @ danRer10
Intron Retention
Gene
ENSDARG00000033566 | cyp17a1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040213-2]
Coordinates
chr13:28473984-28474467:-
Coord C1 exon
chr13:28474258-28474467
Coord A exon
chr13:28474154-28474257
Coord C2 exon
chr13:28473984-28474153
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTCTTTGAATTTGACTTTAGGTT
3' ss Score
8.21
Exon sequences
Seq C1 exon
GTGACCTACAGTGATAACGTGCAGCGGGATCTCCTGGATGCTCTTCTGAGGGCGAAACGCAGCTCAGAAAACAATAACAGCAGCACTCGTGATGTCGGTTTAACTGAAGATCATGTGCTCATGACGGTGGGGGACATTTTTGGGGCTGGGGTGGAAACCACTACTACTGTACTCAAATGGTCTATAGCTTACCTCGTCCACAATCCACAG
Seq A exon
GTAGGCCGAAATGAAACCGCCCTCTCGACTGGGTGTGCTGATCCAAACAGGTTACTATTGATTTTCAGTTAAACATCTAAAACGTTCTTTGAATTTGACTTTAG
Seq C2 exon
GTTCAGAGAAAGATTCAAGAGGAGCTCGACAGTAAGATTGGGAAAGAAAGACACCCTCAGCTCAGCGACAGGGGGAATCTACCTTATCTAGAGGCCACTATCAGAGAAGTGCTGAGGATTCGACCTGTTTCTCCGCTCCTCATCCCTCATGTGGCGCTGCAGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033566:ENSDART00000043156:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.9=100)
A:
NA
C2:
PF0006717=p450=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGATGCTCTTCTGAGGG
R:
GCTGAGCTGAGGGTGTCTTTC
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]