MmuINT1008069 @ mm10
Intron Retention
Gene
ENSMUSG00000094559 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82617132-82617632:-
Coord C1 exon
chr15:82617456-82617632
Coord A exon
chr15:82617274-82617455
Coord C2 exon
chr15:82617132-82617273
Length
182 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
ATCCTTTCTGCCTGGCCCAGGCC
3' ss Score
6.23
Exon sequences
Seq C1 exon
GTTCTTAACACGTTCCCAATACTCCTGCGAATCCCAGGGCTGGCTGACATGGTCTTCCAAAGTCAGAAGACCTTCATGGCCATACTGGATAACCTAGTTACTGAGAATAGGACCACCTGGGACCCTGACCAGCCACCCCGAAATTTGGCCGATGCCTTCCTAGCAGAGATACAGAAG
Seq A exon
GTGATTGATAGCTCCAAGAGATATAACCAGGGGCTGTTGCCTAAGGTCCTGTGAACTGTGGCCTGTAAGGATTGGGTCCTATGAATCATCAAGGAACTCAAGACCTGGGCTGCCCAGGGGACAATGGGACACCATGTGGGACTCCCTCTCCCTACTGAGCCCATCCTTTCTGCCTGGCCCAG
Seq C2 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGTGCATGGTGGTGAGTGATCTCTTCACTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGTGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094559:ENSMUST00000109515:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTTCCCAATACTCCTGCG
R:
GTCACCATCCCTGCAGTGAAG
Band lengths:
252-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types