MmuINT1008103 @ mm10
Intron Retention
Gene
ENSMUSG00000066072 | Cyp4a10
Description
cytochrome P450, family 4, subfamily a, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88611]
Coordinates
chr4:115532531-115533649:+
Coord C1 exon
chr4:115532531-115532704
Coord A exon
chr4:115532705-115533133
Coord C2 exon
chr4:115533134-115533649
Length
429 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TGAAAGTTATTATCTTACAGTTG
3' ss Score
5.43
Exon sequences
Seq C1 exon
GAACTGCATTGGGAAACAATTTGCTATGAGTGAGCTGAAGGTGATTGTGGCCCTGACACTGCTCCGCTTCGAACTACTGCCAGATCCTACCAGGGTCCCCATGCCCTTAGCCCGACTTGTGCTGAAGTCCAAAAATGGGATCTACCTACATCTCAAGAAGCTCCACTGATTCTG
Seq A exon
GTAAGGACAAGGACAGACTCTATAAACATGCTGCCTGACATCTTGTCCAGCCACCATCTTCCCCTCTGTCTGCTCATCTATCTTCACACCTATTTGTTCCCTGCCTCCTGCACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACCTTGCTCTAGATTCTCCATTTGTCTTTCTGTCTCTGCTACCCACATCTGACTGTACTCCTGATAATGAACCTCCTCTCTCCTCCAGTCTTCTCTCCTTGCCTCTCACTTTCCACCTATCTTTTCCCTACATGACTTCTTCATTTTACAAATAATCAATTGTCATAACCTTGGTGGTCTGAAATAATTGAAAGTTATTATCTTACAG
Seq C2 exon
TTGTGGAGCTCCAATGTCTGAGAAGAGTTTCACTGGAGAAAGCTAAGTTGTTGGTGTGACCTACCTTTTTCAGAAGAATACTCCAGAGAGTCCTCTCATCCTCTGTTCAGTATAGATCATCATTCCTTGGCACTGGAATATTCCCCTGCTTCAAAGCCAGCACCCTCCTCATCCCCTCTCTTCTAATGTCCTTACCTTTTACAGATGCTTATGACATCATTAAGATCCCTAAAAGCTCCAAGATAGTTTTCCCATCTAAATGTATCTTATTCAATCTAACCTACTAAGTTCCTTCTGAATTATGAGGAATCATTCAATATGTACCATGGTCTCCAAAATCCAAGGCCTGAACATCATTGTGAAGACATTATTCAGCTTAGTATCATTTTCACATGACAGTTACCTAATGTGTTCATCTAAATCTACCCTGCATAGTCTCTTTCTACCTGATTAATCCTCACACGAGTTTCTCCATCTTCCCTCCTTTCTGCAATAAAGTTCCCAGTGTCATGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066072:ENSMUST00000058785:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(11.0=87.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAACAATTTGCTATGAGTGAGC
R:
GAAGAGAGGGGATGAGGAGGG
Band lengths:
347-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types