RnoINT0044506 @ rn6
Intron Retention
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134506072-134507154:+
Coord C1 exon
chr5:134506072-134506245
Coord A exon
chr5:134506246-134506639
Coord C2 exon
chr5:134506640-134507154
Length
394 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
AGGACGTTATTATCTTACAGTTG
3' ss Score
5.74
Exon sequences
Seq C1 exon
GAACTGCATTGGGAAACAATTTGCTATGAGTGAGATGAAGGTGATTGTGGCCCTGACCCTGCTCCGCTTTGAGCTACTGCCAGATCCCACCAAGGTCCCCATCCCCTTACCACGACTTGTGCTGAAGTCCAAAAATGGGATCTACCTGTATCTCAAGAAGCTCCACTAATTCCG
Seq A exon
GTAAGGACAAGGACAGACTCTATGAACATGTGGCCTGGCACCTTGTCCCCTGTCATCCCTTCCTGTCACCATCTTGCTTTCTGTCTGTTCATCCTCACACCTATTTGCTCCCTGGCCTCTTGGTCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTAGATTCCCCATTTGTTTTTTGGTCTCCTGCTACCCACATCTGACTGTGCACCTGATCCTGAACATCCTTCATCCTCCATCCTTCTCTCCTTGCCTCTTCACTTCTTACCATCTTTTTCCCCTACAGGACTTCTTCATTATACCAATAATCAACGGTCACAACCTTGATGGTCGGGAATAACAGGACGTTATTATCTTACAG
Seq C2 exon
TTGTGGAGCTCCGAAATCTGAAATGAGTTTCACTGGCAGAAAGCTGAGTTGGTGGTGTGACTAGCCTTCTTCAGAAGAGTGCTTCAGAGAGTCCTCTCCTCCTCTCTTCAGTACAGATCACCCTTCTCAGCACTGGAATATTCCTCTGCTTTAAAGCCAGCACCCTTCCCATACCCCCTCTTCTAAAAGCCTTCCCTTTTACAAATGTTCTTATGACATCATCAAGACCACTGAAAAACTCCAAGATAATTTCCCATCTCAATATTCCTTACTCCATCTAACCTACTAAGTCCCTTTTGAATTATGAGGAATAATTCAATTTGTTCCATGGGCTCCAAAACTCAAGGCCTGAGCATTATTGTGAAACCTTTATTCAGCCTAATATCATCTTCACAAGACTGTTACCTGGTACGTTCATCTAAATCTCCCCTGCATAGTCTCTCTACCTGACTATTCCTCACACAAGTTTCTTTACCTTCCCTCCTTTCTCCAATAAAGTGTCCAGTGTCCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597:ENSRNOT00000012888:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(11.0=87.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGATGAAGGTGATTGTGGC
R:
GGGAAGGCTTTTAGAAGAGGGG
Band lengths:
342-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]