RnoALTA0011082-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134506072-134506740:+
Coord C1 exon
chr5:134506072-134506245
Coord A exon
chr5:134506565-134506639
Coord C2 exon
chr5:134506640-134506740
Length
75 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
ACCATCTTTTTCCCCTACAGGAC
3' ss Score
13.24
Exon sequences
Seq C1 exon
GAACTGCATTGGGAAACAATTTGCTATGAGTGAGATGAAGGTGATTGTGGCCCTGACCCTGCTCCGCTTTGAGCTACTGCCAGATCCCACCAAGGTCCCCATCCCCTTACCACGACTTGTGCTGAAGTCCAAAAATGGGATCTACCTGTATCTCAAGAAGCTCCACTAATTCCG
Seq A exon
GACTTCTTCATTATACCAATAATCAACGGTCACAACCTTGATGGTCGGGAATAACAGGACGTTATTATCTTACAG
Seq C2 exon
TTGTGGAGCTCCGAAATCTGAAATGAGTTTCACTGGCAGAAAGCTGAGTTGGTGGTGTGACTAGCCTTCTTCAGAAGAGTGCTTCAGAGAGTCCTCTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597-16-15,16-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(11.0=87.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCTACTGCCAGATCCCA
R:
AGGCTAGTCACACCACCAACT
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]