MmuINT1008151 @ mm10
Intron Retention
Gene
ENSMUSG00000078700 | D030028A08Rik
Description
RIKEN cDNA D030028A08 gene [Source:MGI Symbol;Acc:MGI:2441931]
Coordinates
chr11:96959340-96960062:+
Coord C1 exon
chr11:96959340-96959451
Coord A exon
chr11:96959452-96959553
Coord C2 exon
chr11:96959554-96960062
Length
102 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
3' ss Seq
CATTTGTTTATCATGTGCAGATG
3' ss Score
7.73
Exon sequences
Seq C1 exon
TAAATGGCTGGCTGAGTAACTGGGGCGCAGGAAGGAGAGGACCTGCCCCTTCTGTCTTCTCTTCTGCTAGCCTCAGACACCCTGAGTCAGGCGAGGGCCCACTGCTCCCTTG
Seq A exon
GTGGGTACTGAGTGGGTGTTAAGCACTGTTTGTTTTATTATTACCTGACTGTGTGGGGGTGCTTTGTCTAATGTCTTTATCACATTTGTTTATCATGTGCAG
Seq C2 exon
ATGGAGACTACAGGAGGACTCGGAATCCTCTGGGAGTGGAGTTACAGCTGGTTGAGAGCCACGTGAGTGCTGGGAATCAACCTTGGAACCTCTGGAAAAAGCGGCGAGTCAACCACAACCCATCGCTCAAGCCCCATTGCTGGGCCTGGTGACAACGCATGTCAGTCCTGCCTCAGCCCCCTGAATGCATGTTTACAGATGTGCACCAGAGCACCTGACTCAAGTTTTAAACGATCATTTTGAGCACTCCTTCTCATGGCCATTTCCCTGTAAATCAGCAGAGACACTGGGGAATGGAGCAGTTTGACTCCCATGGCTGCTGGAGTCTCCTTTACTGCCCCGTCTGTCTTGAGCAACACTGGGCTCTGTCTGTTCTTGTCTGCTTTTAGAGTGGGCTGAGCTGGTAACATAAAGGAGCAACAGCTGAGTGGCGGTGATGACGCCTTTAATCCCAGCCCTCAGGAGGCAGAGGTAGGCAGATTTCTGAGTCTCAGGCCAGCCTGGGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078700:ENSMUST00000107628:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCTAGCCTCAGACACCC
R:
AAACATGCATTCAGGGGGCTG
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types