MmuINT1031945 @ mm10
Intron Retention
Gene
ENSMUSG00000018678 | Sp2
Description
Sp2 transcription factor [Source:MGI Symbol;Acc:MGI:1926162]
Coordinates
chr11:96957424-96962009:-
Coord C1 exon
chr11:96961038-96962009
Coord A exon
chr11:96957737-96961037
Coord C2 exon
chr11:96957424-96957736
Length
3301 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TCTTTTCTCTGGCCCCTCAGGTT
3' ss Score
10.31
Exon sequences
Seq C1 exon
GACTCCCAGCCATCTCCCTTGGCCCTGCTTGCTGCGACATGTAGCAAAATTGGCCCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCTCCCCCCCAGCCTACCCCAAGGAAACTGGTCCCTATCAAACCCGCTCCTCTCCCTCTCAGTCCCTGCAAGAATAGCTTTAGCATCTTATCATCTAAAGGAAATATACTTCAGATTCAGGGCTCCCAGCTGAGTACCTCCTACCCTGGAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTCAGATCCAAGGGAACAGTTCCCAGACCATCCAGGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCATCCCAGGCACCAACCAAGCCATCACCACCCCGTCAACATCTGGTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAGTCAAGTACGACTACCACCCCTGTGCAGAGCGGGGCCAACGTGGTGAAGCTGACAGGCGGGGGTAGCAACATGACGCTCACCCTGCCGCTCAACAACCTGGTGAACACCAGCGATATTGGGGGCCCTGCTCAGCTCCTCACTGAGAGCCCCCCCACCCCACTGTCTAAGACTAACAAGAAAGCTAGGAAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACCCTCCCCACCGTCCCCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAG
Seq A exon
GTACCATAGTCCCTCTGCCCTGCCTCCCCTCCTCTGCTCACCCTTTTGGCTTGCTTTTGAAACTGAGGCAGATCATCGTCAGATCTTACGGGAAGCTGGAGTCACCATCATTTGGGGTGGGCAGGAAATGGCTTCTCCCCTGGAGTCTCTTCAGGTCTTAGGCCAAGTAGTCCTGACCTGTAGAAATCAGATGGAACAGGGATATCTGGTCTGTTTTATTCTTTCCTTATGGGGTAGCTCTGGGGGCATAATGGGGTAGATCTGTATACTGTCATAATAAAGTATTTTTAATGTAAGAGTATATATAACAGCAAGAATGAGAATTCGAACTAGAACCATAGAATCTGCTGTAAAGTAGGAAAGTTCAAGAGAAAAAAATGCTGGCCTCTGCTAAAGACAAGAGCAATAGCAGTGGGGCAGCCAGGCCTTTTCCTTTCTGAGACAGGTCTCCCTGTGGGTCCCAGGTGGGCCTTTACCTCGCTGCACAGCCCAAGCTGGCTTCACTCGCTGCACAGCCCAAGCTGGCTTCAGACATGGGACCCTCCTGCTCCAGCCTCAGTGCAGTGCTGGGGTCGCATGTGTGAGCTGTAGCCTTGCTTCTTTGCACCCCTGTTTATCCTCCCCGAGAGGGGGTTGTCCTTCTGCTTCCTTCACTGTGTGTGCATGTGGCCACTGAGCGTGTGTTTTCCCCTCTAGTCTAGATCCCTCCTAAGGGAGAAGACATTCGTCTTCCTGAGCCTGCCATGTTCCACTCACCATGATGACCTCTGGGTTCTGGAGTGTGCTCACGGCTGCTTTTGCTTCTGCTGCTGTCAGGGCAGCTGGCCATTCTGCCAGCTGTCAACTCTTGTCTTTTTAGCTGCCCTGTGGCCGCCATCTTGCTGCTTTGGTAGCCTGCCCTGCCGGCTGCTTAGCTCTCTGGTCACTTTGCAGTCTCTGCTGCTGCTTTTTTCTTCCTTCCCTTTTTTTTTTTCTGTAGCCCAGGCTGGCCTGAGACTCAGAAATCTGCCTACCTCTGCCTCCTGAGGGCTGGGATTAAAGGCGTCATCACCGCCACTCAGCTGTTGCTCCTTTATGTTACCAGCTCAGCCCACTCTAAAAGCAGACAAGAACAGACAGAGCCCAGTGTTGCTCAAGACAGACGGGGCAGTAAAGGAGACTCCAGCAGCCATGGGAGTCAAACTGCTCCATTCCCCAGTGTCTCTGCTGATTTACAGGGAAATGGCCATGAGAAGGAGTGCTCAAAATGATCGTTTAAAACTTGAGTCAGGTGCTCTGGTGCACATCTGTAAACATGCATTCAGGGGGCTGAGGCAGGACTGACATGCGTTGTCACCAGGCCCAGCAATGGGGCTTGAGCGATGGGTTGTGGTTGACTCGCCGCTTTTTCCAGAGGTTCCAAGGTTGATTCCCAGCACTCACGTGGCTCTCAACCAGCTGTAACTCCACTCCCAGAGGATTCCGAGTCCTCCTGTAGTCTCCATCTGCACATGATAAACAAATGTGATAAAGACATTAGACAAAGCACCCCCACACAGTCAGGTAATAATAAAACAAACAGTGCTTAACACCCACTCAGTACCCACCAAGGGAGCAGTGGGCCCTCGCCTGACTCAGGGTGTCTGAGGCTAGCAGAAGAGAAGACAGAAGGGGCAGGTCCTCTCCTTCCTGCGCCCCAGTTACTCAGCCAGCCATTTACTACCTCAGAGAAAAAACAAGTACAACATTGTAAGGTTTTTAAATGGGGTACATATACAGAACTGGAAAGGGACCTGAGGCTTCTATATGTATTAAGGGATGGCAGGTTCAGATGTTATCCTTTAACTAAAAGTCTTCAGTATCCAGGAATTAAATATAACCCCAGTTAAAATCAGTCTTACAAAGGATTTTTTTCTCCCTGGATCATTTAAACATAAACTGCCACCATGATCCCCCTCCCACTTGCAAATGCTTTAATTCTCCCACACAGGCACAGCCCCTGCGCACACCGCAGCCTTCAAGCCTGAAACTCACTAGTGAACTGCTGGTGTCTATCGGGGAGGTACCATTCAGGTCTCACCACATGCTTCGGATAGTAATTCCAACGCTGCCTAAGGACTCTGTCCACCTTACATGTAGTTGTCGCATCTCTCTGGTCAGATCTCTCTTTCAGAAAGAATTCCTCGCATCCCCCACCTCCATGGAGCTGGAAATTAAACCAGGGCTTCGTGGATCCTAGGCACTTAAGTGTCCTACCCTGAACTACATCCTCAGCCCCACTTCCTCTTTAATGTGGCAGTCAACCTTGCTGCTGTTGAAGGCCACAGGCTAGTTGTTTTGTAGAATGTCCTTTAGTTTGTTTATGTGATGTCCCATGAGTGGATTGCATTTGCCATCCCAGTGCTCATACAGAGAGAGGTGAGAGCAGAAACAGGAGGACCAGACAGGAACCAGCCAGCCTGGCATATGCAGTAGCGAACAAGAAGCCCTACTTACAGGAAGGCAAGGTTGTCCTGTGACTTCCACAAGTGTGCTGTAGCACATGCGTACCCATACTCTCACACATAAACACATACACACACACACATACACACACAACATAAAATTTTTTCCTCCTTGTATTTCATTAGTATTTTGAAGAGAGACATTTTGGGATAAGATAAATATCGAGTTCCTCTTAAACAATTTCTTAGATTATTTTATTATATATATATATGTATGTATATATATATATATATATATATATATATATATATATATACACACACACACACACACACATATAAGAGGTTCGCTTGCATATATATGTACGTGTACTATGCCTAAACATAGTATGTGAACATGCCTCATGCCTGAGAAGGTCGGCAGAGGGCATCAGCTCCCCTAGAACTGGAGTTAGGGATGACTGTAAGCTACTGTGTGGATGCTGGGAAATCTGGGTCCTCTGGAAGAGCAGCCAGTACTCGTAACCTCAGGCCCATCTCTCCAGCCCCTGCTGTTTAAAGATAGTTTACTGTGTGGTTAAGCTGGCTCCACATCACTTTGTAGCCCATGCTGGTGGTGTGCTTTTTTATTCATCTTCCAGTTTTGAGATTTAGCAGTTAATATTTTTCCATGCTAAGCAGATTAAAAGTTTGGTTGCAGGTCAGTAACCAGCTCATGCCGATTGAGTGCAGGGCAGCATCGGCCCTGTTAAACATGAGTAGTGCACAAGTGTGTTCTTGGGCTGGATGAGATGACAGAGGTGTCCCAGTTCTCCCTCGGACAAGGAAGGTCATGCTGCCATCTGTCTTAGAGCACTCTCTTTTCTCTGGCCCCTCAG
Seq C2 exon
GTTTATATCCGTACACCTTCTGGTGAGGTACAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACCACATCAACCGTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCATCTGAGTGGCACCAGCAAAAAACATTCAGCTGCCATTCTCCGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018678:ENSMUST00000062652:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types