BtaINT0139325 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013740 | SP2
Description
Bos taurus Sp2 transcription factor (SP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001015654]
Coordinates
chr19:39201338-39205115:-
Coord C1 exon
chr19:39204141-39205115
Coord A exon
chr19:39201651-39204140
Coord C2 exon
chr19:39201338-39201650
Length
2490 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TTCTCTCTGGCCCCTCCCAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GACTCCCAGCCATCTCCCTTAGCGCTGCTTGCCGCGACATGTAGCAAAATCGGCCCTCCAGCTGTTGAAGCTGCGGTGACGCCTCCTGCTCCCCCCCAGCCCACTCCACGGAAACTCGTCCCTATCAAACCCGCCCCTCTCCCTCTCAGCCCCAGCAAGAATAGTTTTGGAATCTTGTCCTCCAAGGGAAACATACTTCAGATTCAGGGGTCACAGCTGAGCACGTCCTACCCTGGGGGGCAGCTGGTGTTTGCCATCCAGAATCCCACCGTGGTCAACAAAGGGACCCGATCGAACACCAGTATCCAGTACCAGGCGGTCCCTCAGATCCAGGCCAGCAGTCCTCAGACCATCCAGGTGCAGCCCAGTCTGACCAACCAGATCCAGATCATCCCTGGCACCAACCAAGCCATCATCACCCCGTCCCCGTCCAGTCACAAGCCCGTCCCCATCAAGCCAGCCCCTGTCCAGAAGTCAAGTACGACCACCACTCCGGCACAGAGCGGGGCCAATGTGGTGAAGCTGACAGGTGGCGGTGGCAATGTGACCCTTACTCTGCCTGTCAACAACCTCGTGAACACCAGCGACCCCGGGGCCGCCACTCAGCTCCTCACGGAGAGCCCCCCTGCCCCACTGTCTAAGACTAACAAGAAAGCCAGGAAGAAGAGTCTTCCTGCCGCCCAGCCCCCTGTGGCTGTGGCCGAGCAGGTGGAGACGGTGCTGATCGAGACCACTGCAGACAACATTATCCAAGCAGGAAACAACCTGCTCATTGTTCAGAGCCCCGGCGGGGGCCAGCCAGCCGTGGTCCAGCAGGTCCAGGTGGTGCCCCCCAAGGCCGAGCAGCAGCAGGTGGTGCAGATTCCACAGCAGGCCCTGCGGGTGGTACAGGCAGCGTCCGCCACACTCCCCACCGTCCCCCAGAAGCCCTCCCAGAACTTCCAGATCCAGGCTGCTGAGCCGTCACCTACTCAG
Seq A exon
GTATCACGCTGACCTTTCCGCAGCACTTCCCTCTCCTCCTCAGCTCTAAATGGCTGATGCTCCGTTCCACTTGGCTCGCTTTTCTAGGTGATGCTGGTACATCTTCCCATCTGACCTCAGCGTTGGGAGTCAGGATCGTTTGGGATGGGTAGTAAGGGCCCATTTCTGCCAGATTGTAGGGCCACATACTGCTTGTCTTTAGAAATCAAGTACAACATGCATATACACCCATATTTTGAAAACTTCCTTTAGGGGAGTCTTTTGGTAGGGGGATGAGTAGGTGGCAGATATGTAAAGTTCAGGGACTTCCCCTGGCAATCTAGTGGTTAGAACTCTGCTTCCACTGCAGGGGGACACAGGTTTAATGCCTGTAGAGGAACTAAAATCCCACATGCCGCAAAAAAAAAACGTTTTTTTATTCTAGAACTACATACTCAGAATGATAGTAAGAGTGAAAAAATTCTAGTCAGAATCATAGAATTTGATATAAAGTAAGAAAACTAATGAGAAAAATGCTAATCATTGTTAATGACAAAAGTTCAGAAGAGGCACCCCTCCCTAGCTTTATAGCAGGAACATTTAGGATACATCCATCTGTGATGCTGACCTAAACAGGAACTTACTTTTGGCATTTATTAGGGGGCTGTAATATTCAAATTTATATGGCTCTGCAGGGCAGCGTTTATACTTTGTGTAAATTTAGTAAAAGCCAGAGATTAGGCCCATGTTGCAGATGGAGAAGCTGAAACTCAGAGAAATTATTAATATCCAGATCTAATAGAGCACAAATAAGTGGATTCAACATAAAGAGCCAGGATTCAACTCAGATTTCAGACCCACACTTTTTTTCCCTTATTCCACCCTGGCTCACTATGTTATGTGTAGCAGGGGCTACAGTTAAAATTGTTTAAGGATTTCTTTTTGAATATAAAAAACCAGCTTCTGCCATGGAGGAATTTATAATCCAGCTGTCTATAGAGAGAACCAGGGCATCGGGGTGAGTGATGACAGTAGGGAGTGTGCAGGTGAAGAAGCACCCTGGGGAGGAAATCTGAGGCCTGCCCTTAAGTGCCTCCTCCCTTCTGGTATATTGCACACTGCCAAGTGGCTTTCTGTGAATCAGTGTAATTTGTTGTAGCACGTGTGAGCCTCCCTTATCAGACCTACCTTGATGGTGAAGAACTGAGGCAAGACTGCTCAGGTGCTGCAGCCTCCAGGTGCCTCCCTCTCTCCCCTAAGGTCCCGGGTCTTGAGACTGATGGAGACAGGGCTTAAAATCGGGGTCCTCCTAAGGAAGTAAGGATACATGTGCAGAAAGATTAGCGCTACAACGTCATGTTTTAATGATCGTATATTTCCTGAGGTACTGTCTGTTATCCAGCTAAAACCCAGCTATTAACTCTGGATCTTCTAGGCTAATTTCAATCTTATCACTAAATAAATTCCTAAAATTGGGTCAAAGGATATGCATGTTTTTAAAAATGTGTACTGTACTCTCTATGAGAGAGATTCGCAGTCCTCAGTCCTGAGGTCACATCTGGCCAATTTGTGTGGTTATTCACTGTAAGACAGAGACCTCAAGACCTGCGTAGCCTAAAATACGTATGTATTATCTTCCCTTTAGAGAAAAAGTGTGTTGGACTCTGCTCTATATTGTGAGAAAGAAAATGTTCTAGTAACAGAAATTTCAGATATGCAGAAAATAGCAATGATTTTTTTTTTTTTAGCAATGATTTTCAAAAGGGGCAGGCACATACCAGAAAATTGAGGATGAGATGTGTACTTAATAATAGATAACATGAGGTTTGTTTGCTTTTAACTGAGAAATCTGGTTCTAAATAATCCAAGGATCAAAAATAATCCCAATCAAAAAAAATAATAACTCCAATCAAAATCATAGCAGAATTTTTTTTAACAAATCATTTGAGTATAAGTTGCCATCTTGCCCCTGTTACTCCCGAATGTTTTATAGAAAGTGTGTAATTCTTATACACAAGAAGGACATTCTATATAACAACAGCACAACCATCAAGCATAGAAAACCAGCAAGGATGCACACTAACTTTTAATTCAGAGACTCCATTCAGGTCTCACCACTTGCCCCAGTGATTCCTTTGTGGCAAAAGGATCTCCTAAAGGCTGTTTTCATTTGTTCGAAGAGCATTCACAGTGCATCTTTTGTGAGATCATCATTTAGCTGCCTTCTAATTCTTCAGTTCGGAGATTTGGCATTATATTTTTCTATGCTAAGTAAACTGTTTTGTTTCAAATCAGCAGATAACATCTGTCAGCTTAGTACAGGGATGCCATCAGCCCTGTTTGTTGGGCATCAGCAGCGGGCAAATGTAGGTCTGGGCTAGTTGGAGAAGACTTGGGTGGACAAAGAGGTCCCCATTTCTTTCTTGGGGCAGGGAGATGGTGTTGCATTGAAACGTGGCAGGTGCCAGGACTCTCAGGGGGCACTGACTTTTTCTCTCTGGCCCCTCCCAG
Seq C2 exon
GTCTACATCCGTACGCCTTCTGGTGAGGTACAGACGGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCGACTGCCTCCACCACCACTTGTAGCAGCCCCGCGTCCCGTGCTGCCCATCTGAGTGGGACCAGCAAAAAGCACTCGGCTGCAATTCTCCGAAAAGAACGACCCCTGCCAAAGATCGCTCCTGCTGGGAGCATCATCAGCCTGAACGCAGCACAGCTGGCAGCGGCGGCCCAGGCCATGCAGACCATCAACATCAATGGTGTCCAGGTCCAGGGCGTGCCCGTCACCATCACCAACACTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013740:ENSBTAT00000064585:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]