RnoINT0141895 @ rn6
Intron Retention
Gene
ENSRNOG00000010492 | Sp2
Description
Sp2 transcription factor [Source:RGD Symbol;Acc:1592078]
Coordinates
chr10:84894985-84899617:-
Coord C1 exon
chr10:84898646-84899617
Coord A exon
chr10:84895298-84898645
Coord C2 exon
chr10:84894985-84895297
Length
3348 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TCTTTTCTCTGGCCCCTCAGGTT
3' ss Score
10.31
Exon sequences
Seq C1 exon
GACTCCCAGCCGTCTCCCTTGGCTCTGCTTGCTGCAACATGTAGCAAAATTGGCCCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCTCCCCCCCAACCTACCCCAAGGAAACTGGTCCCTATCAAACCCGCCCCTCTCCCTCTCAGTCCCTGCAAGAATAGCTTTAGCATCTTGTCATCTAAAGGAAATATACTTCAGATTCAGGGCTCCCAGCTGAGCGCCTCCTACCCTGGAGGGCAGTTTGTGTTTGCGATCCAGAACCCCACTCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTCAGATTCAAGGGAACAGTTCCCAGACCATCCAGGTGCAGCCCAATCTCACCAACCAGATCCAGATCATCCCAGGCACCAACCAAGCCATCATCACCCCGTCAACATCCGGTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAATCAAATACGACCACCACCCCTGTGCAGAGCGGGGCCAACGTGGTGAAACTGACAGGTGGGGGTGGCAACATGACGCTCACCCTGCCACTCAACAACCTGGTGAACACCAGCGATATTGGGGCCCCTGCTCAGCTCCTCACTGAGAGCCCCCCGACCCCACTGTCTAAGACTAACAAAAAAGCTAGGAAGAAGAGCCTTCCTGTGTCACAGCCCTCAGTAGCTGTGGCTGAACAGGTGGAGACGGTACTGATCGAGACCACAGCAGAGAACATCATCCAGGCAGGAAACAACCTGCTGATCGTCCAGAGCCCTGGTGGGGGCCAGCCCGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCCGAGCAGCAACAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAGGCTGCCTCTGCCACCCTCCCCACCGTTCCCCAGAAGCCCTCCCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAG
Seq A exon
GTACCACAGCCCCTCTCCCTTCCCTCCCTCTCTGCTCACCCCTTTGGCTTGCTTTTGAAACAGAGGCAGATCAGCAGCAGATCTGATGGGAAGCTGGAGTCACCATCATTTGGGGTGGCAGGAAATGGCTTCTGCCCTGAGATCTCTTCAGGTCTTAGGCCAAGTAGACATAGTTCCCTCTGTAGAAAGCAGATGGAACAGGGAAAACTGGTCTGTTTTTTCTTTCCTTATGGAGTAGCTCTGGGGCCATAACAGGCTAGATATGTATACTTTCATAATAAAGTATTTTTATTGTAAGATTACATATAACGGCAAGAGTGAGAATTTGAGCCAGAACCATAGAATTTGGTGTAAAGTAAGAAAGTTCAGGAGGAAAAAAATGCTGGCCACTGCTAATGACAAGAAAAATAACAGGTGCAGCCAGACCTTTTTCCTTTTTTGAGACAGGGTCTCCCTGTGTCCCAGGTAGGCCTTTACCTCACTGCACAGCCAAAGCTGGCTTCAAACTTGGAATCCTCCTGCTGCAGCCTCAGTGCTGGGATTACAAGTGAGCTCTATCCTTGCTTCTCTCCACCTCTGCTTCTCCCTGAGAGATGGTTTCTTGTGCTTCATTCATTGTGTGTGCACGTGGGCATGTGAGTATGCGTTTTCCCCTTCAGTCTAGACTCCTCCTGAAGGAGAAAACAAACTTGTTTTCCCGACCCTGTCATTCCACTCAACATGATGACCTCTGGTTTCTTGGAGTACGTTCACAGCTGCTTCTACTTCTGCAGCTGTCAAGGCAGCTGGCCATTCTGCCAGCTGTTCAACTCTTGTCTTTTTAGCTGCCAAGTGACCGCCACCTTGCTGCTTTGTAGTCTGCCCTGCCAGCTGTGCGCAGCTGCTCCTGTCACTTTACAATGTCTGCTGCCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCAGCCAGGCCGGCCTCAGACTCAGAGATCTGACTGCCTCTGCCTCCTGAGGGCTGGGATTAAAAGCTTGCACCACCATGCCCAGTTGCTGCTCCTTTCTGTTACCAGCTCAGCCCACTGTAAAGCAGACAGGAACAGACAGAGCCTAAGGTTGCTCAAGGCAGACAGGGCAGTAAAGGAGACTCCAGCACCGTGGGAGTCAAACTCCGTTCCCCAGTGTCTCTGGATCCCATTACAGATGGTTGTGAGCCAACAGATTGTTGGTGCTGGGAAATGATCGTGAGAAGGAGTGCTCAAATGAACGTTTAAAAGTTGACCCAGGGACTGGAAAGATGGCTCAGCGGTTAAGAGCACCGACTGCGNGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAGCACCGACTGCTCTTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGATAGCAACAGTGTACTCATATACATAAAATAAATATTAAAAATATTTTTTAAAAAAAGTTGAGTTAGGTGCAGTGGTGCACACCTGTAGCCATATTCAGAAGGCTGAGGCAGGACTGACATGTGTGTTACCAGGCCCAGTGATTTTAGCAGACTTGAGCAATGTTCATCATGGGGCTGGAGAGCTGGGTCATGGTTCAGAAACTGGCTGCTTTTTCCAGAGGCTCCAAGTTTGATTCCCAGCACTCACATGTTGGTTGTCAACCAGCTGTAACTCCACTCCCAGAGGACTCAGCGTCCTCTTGTGGTCTCCATCTGCACACATGTGATAACAGACATGTAGACAACACATCCACACAGCATGGTAATAAAAATCAAGCAGTGCCTAGCACCCAGCACCCACCCAAGGAGAGCGACCCCCCACCTGACTCAGGCTGTCAGAGCTTAGCAAAAGGGAAGACAGAAACGGACAGGTCCTCTCCTCCCGCCCCCCCCCCCGCCCCCCGGTTAGTGAGCCTGTTTACTACCTCAGAAAGAATGAGTACATGGCAACATGCTACAGATTGGGGAAGATATGAGGCCTCTGTATGTATTGAGGGATGGCAGGTTTATATGTTGTCACTTAACTAAAAGCAGTCTTCAGTAACCAGGAATTAAAAATATCCCCAATTAAAATCACAGTTTTACAAAGGATTTTTTTTTCCTGGATCATTTAAGCATAAACTGCCACCATGGTCGTCCTCCCACTTCCAAGTGCTTTAATTCTCCCACACAAGCACAGTCCCTGTACACATCGCATCCATCAAGCCTGAAACTCACTAGTGAAATGCTGGTGTCCAATGGGGAGGCACCACTCAGGTTTCCTGCATGCTTTGCTTAGTAATTCCAGCACTGCCCATGGGCTCTGTCCACCTCATGTACAGTAGTCACACGTCTCTGGTCAATCTCTCTTTCAGGAATAGTTCCTCACACCCCCACCACCATGAAGCTGGAGTTTAACCCAGGGCTTCGAGGATCGGCACTTTTTACCTTGACAGTCATGGCCTTGCTGCTTTCGAAGGCCACAGGCAGTTGTTTCACAAAATGTCCTTGAGTTTATGTGACATTCCCATGAGCGTGCTCACAGAAGGGTGTGCGCTGTGCCAAAGCAGTTCAAGAGTTCTGTTTGTCCTATTGTTGGTGACAGTTACAGTGGCAGAGCCTGACAAAGGAGAGAAGCAATGATCCTCTATATCTAATTATGAACTTGTTTTTCTTTCTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTCTCTACCACTGAGCTAAATCCCTAACCCCTTCTTTTTTTTTAAGATTTATTTTTATATATGAGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGAGCAGTGGATCCCATTACAGATGGTTGTGAGCCGCCATTGTTGGTGCTGGGAAATGTGGAACCTCTGGAAGAGCAGCCATTACTCTTAGCCACTGGTCCACCTCTGCAGCCCCCTCCTTTTAAAAGATAATTTTGCTTTGTGGTTAAGCTGGCCTCCATGTGACCGTAGCCCATGCTGGTGTTGTGCTTTTTTACTAGTCTTCCGATTTTGAGATTTAGCAGTTAATATTTTTCCATGCTAAGCAGAGTAAAGGTTGGGTTACAGGTCAGTGACCACTCATGCCAGTTTAGTGTAGGGCATCATTGGCCTTGTCAAGCATCAGTAGTGCATAAATATGTTCTTGGGCTTGATGAGATGACAGAGGTGTCCCAGCCCTCCCTTGGACAAGGTCATGCTGCCAACTCTTTTCTCTGGCCCCTCAG
Seq C2 exon
GTTTATATCCGTACACCTTCTGGTGAGGTACAGACGGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACCACGTCAACCGTCTCCTGTAGCAGCCCGGCGCTCCGAGCTCCCCATCTGAGTGGCTCCAGCAAAAAGCATTCGGCTGCAATTCTCCGAAAAGAGCGACCCCTGCCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCTGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010492:ENSRNOT00000068083:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]