HsaINT0157097 @ hg19
Intron Retention
Gene
ENSG00000167182 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:11207]
Coordinates
chr17:45993522-46000640:+
Coord C1 exon
chr17:45993522-45994496
Coord A exon
chr17:45994497-46000327
Coord C2 exon
chr17:46000328-46000640
Length
5831 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TTTTCTCTGGCCCCTCCCAGGTC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GACTCCCAGCCATCTCCCTTAGCCCTGCTTGCTGCAACATGTAGCAAAATTGGCCCTCCAGCAGTTGAAGCTGCTGTGACACCTCCTGCTCCCCCACAGCCCACACCGCGGAAACTTGTCCCTATCAAACCTGCCCCTCTCCCTCTCAGCCCCGGCAAGAATAGCTTTGGAATCTTGTCCTCCAAAGGAAATATACTTCAGATTCAGGGGTCACAACTGAGCGCCTCCTATCCTGGAGGGCAGCTGGTGTTCGCTATCCAGAATCCCACCATGATCAACAAAGGGACCCGATCAAATGCCAATATCCAGTACCAGGCGGTCCCTCAGATTCAGGCAAGCAATTCCCAAACCATCCAAGTACAGCCCAATCTCACCAACCAGATCCAGATCATCCCTGGCACCAACCAAGCCATCATCACCCCCTCACCGTCCAGTCACAAGCCTGTCCCCATCAAGCCAGCCCCCATCCAGAAGTCGAGTACGACCACCACCCCCGTGCAGAGCGGGGCCAATGTGGTGAAGCTGACAGGTGGGGGCGGCAATGTGACGCTCACTCTGCCCGTCAACAACCTTGTGAACGCCAGTGACACCGGGGCCCCTACTCAGCTCCTCACTGAAAGCCCCCCAACCCCGCTGTCTAAGACTAACAAGAAAGCAAGGAAGAAGAGCCTTCCTGCCTCCCAGCCCCCTGTGGCTGTGGCTGAGCAGGTGGAGACGGTGCTGATCGAGACCACCGCGGACAACATCATCCAGGCAGGAAATAACCTGCTCATTGTTCAGAGCCCTGGTGGGGGCCAGCCAGCTGTGGTCCAGCAGGTCCAGGTGGTGCCCCCCAAGGCCGAGCAGCAGCAGGTGGTACAGATCCCCCAGCAGGCTCTGCGGGTGGTGCAGGCGGCATCTGCCACCCTCCCCACTGTACCCCAGAAGCCCTCCCAGAACTTTCAGATCCAGGCAGCTGAGCCGACACCTACTCAG
Seq A exon
GTACCACACTCCCTGTACTGTCCTCCTTCTCCTCCTCTGGTTATCTCTTTTTGGCTTGCTTTGAAGATGATGCTGGTCATCTCCCAGCTTGATCTGACCTTGAGAGTCAGTATCTTTTGGGGTGGGCAGTAAGTGGCCGTTTCTACCTGACAAATGGGCTCTCTTTAGTTCATAGGGCCAAGTACTTCTTATCTTTAGAAATTGATGAAACATAGGGATATTTTGGCACCTTTTCCTTATAGGTTGTTTTTTTTCAGGGGATGGTGAGGGGATAGATACATACTTGTTAATAACTTATTTTTGATTATAGAATTACTCAAAACATTAGCAAGAATGAAAACATTCCAGTTCATAGAATTTTATGTAAAGTAAGAAAATTAATGAGAAAAATGCTGATCATTATTAATGACAAGAAAAAAACAGGAAGAGCAGCCTAGCTTTATAGCAGGAATATTTAGGCTAGATTCATCTGGAATGTTTGTTTGTTTTAGGGTGTTTTTTTTTTTTTTGAGATAGGGTCATACTCTGTTGTCCGGGCTGGAGTGCAGTGATGCGGTCACTACAGTCTTAATCTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTGAGTAGCCAGGACTACAGGTGTATGTCACCATGCCAGGCTGAGCCACTGCTTCCTGCCAAACTGGGATGCTGAATTCAACAAGAATGTTCTTATTTTTGGCATTTATTAATGTGCTCTAATACTCTGGAATCTCTTTGGCTCTGTGAGGCAAGTTTTATTCTTTGTTCATGCCTGCTAAGTGCCAGTAATTGTGCCCATGTTGCAGATGGATAACCCAGAACTCAGATAATTTATGAAGTATCCAAGATCAAATAGGGCATAAATGACAGGAACCAGGAGTCAATTGAGATTTGTAACTTCAGACCCCACACTCTTCCATCTTCCACCTTGACTCTTGTGTCTTATGTGTAGCAGGTGCTACCATTAAAATTGAGGAGTTTTTTTTTTTTTAATATAAAAAACAGTTCCTGCCATCGAGGAATGTATGACCTAGTTGTCTATAGAGGAAGAACCGAATGACTGAGAGTGGGAAGTTGTGTAATTTCCTGGGTGGAGAAGAGAGCCTTTGAATTTGAACTGTGGACATAGAAATCACACAGGAATTCACCCTTCTGGCATATTTAATGTTGCCAGGTATTTTTTATAAGTCATTTATCACAATATCTGTGAATTCCCATGATCAGACCTACCCTACAGGTGATATTTTATGTTGCCAGGTGATTTTTTATAAGTCATCTATCACAAATATCTGTGAATTCCCATGATCAGACCTACCTTACAGGTGAAGAATTGTGGCACCTGCTCAGGAGCACATCCTCGGCATTGCCTCCCCTCCCTTCCATGAGGTCCCATTTCTTGAGGTTGATGGAGACAGGACTAAAACCCAGGTCTTCCCTAAGGAAATAATGATACATATGCAGAAAGATTTAGCTACAGTATTATTTTTTCATGACTACACAGCTTTATAACATCCCAACATGCTGATTATTATACAACTGATACCTTGTTAACTGTATATATCTAGGCTGTTTCCAATCTTACAGCTAAATAAATCCCTGAAAGTGGGTCAAGGACACGTACATTTTTAAAAAATTTGTATTCTATATTAGAGGTTTGCAGTCTGTGACCAACTTTGAAGCCAAATCTAGCCCACCTGCCTGTTTTTGTAAATAAAGTTTAATTGGAGTGCAGACACGTCCATTTGTGTTGCCCTTGCACTACAGTAGTAGCACAGTTAAGTAGCAGAGACAATATGCCCCGCAAAGCTAAAATATTTACTCTCCGGCCCTTTATAAAAAAAGCTTGCTGAACCTTCAGATGCAAATACACACACACACATGCATGCACGCATACACACACACACACAAAATCAGACATAAAATATCAGTGATTTGAAAAAGGGGCACATATCAGAAAACTGGGAATGAGATTTGCATATTTACTAAGAAATGGGCCAGGTGAGGTAGTTTATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCTAGAGATTGCTTGAGCCCAGGAATTCAAGACCAGCCTGGGCAAGATAGCAAGACCCCATCTCTACAAAAAAATTAAAAATTAGTGAGGCATGGTGCTACACACCTGTAGTCCCAGCTATTCAGGAGGCTGAGGTGGGAGGATCACTTGAACCCATGAGTTCGAGATTGCAGTGAACTATGATCATTCTACTGCATTTTAGCCTGGGTGACAGAGACCCTGTCTCTATTTAAAAAAAAAAAATTTTTTTTAAAGAGATGAGATGTTTGTTAGCTTTTAAGTGAGAAGAAGCACAGTCATAAATAATCCAGGAATTAAAAATTACCCAAATCAAAATCACAACAGGATTTTTTTTTTACAAAGAACTTTTTTCCTTTTGACTCATTTGAGTGTAAATTGCCACCATGATCCCCCTTGTCATTTCTGAACGCTTTAATTCCTACACACAAGAACATTCTACATTACCACAATACAATCGTCAAACCCAGGAAATTAGCAGTGAAACACACTGCTAATTCCAAGACCCCACTGTGTTTTCACCACTTGCCCCACTAATTCCTTTGTGGCAAAAGGATCTGATCCAATATTACACATTACGTTTAGTTGTCTCCTTAGTCTCTTTTGATCTGAAACACTTTGTCATTCCTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTTTGAGACAGGGTCTCGTTCTGTCACCAGGCTGGAGTGCAGTGGCAATCTTGGCTCACTGCAACCTCCAACTCCTGGGTTCAAGCGATTCTCCTGTTTCAGCCTCCCAAGTTGCTGGGATTACAGGCGCGTGCCACCACGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTGGCCAGGATGACTTCCTCATTCTTTACTTGACCATCATGACCTTGACACTTTTGAAGGCTAAAGGTCAACTTTGGCCATTGGCAGCTCTTTCAGGTCGGCTCTTTTTTTCTCTTTGGCCATTGGCAGCTCTTTTCAGGTCGGCTCTCTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAATAGCTGGGATTACAGATACCCGCCTCTGCGCCCTGCTAATTTTTGAATTTTTTTTTTTTTTTTGGAGACGAAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTGCCTCAGCCTCCCAACTAGCTGAGACTACAGGCGAGCGCCACCATGCCCAGCTGATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGGTAGTCTCGATCTCCTGACTCTGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCGGCCAATTTTTGTATTTTTTTAGTAGAGACGGGGTTTTACCATCTTGGCCAGGCTGGTCTCGAACTTCTGACCTTATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTCGAGCCACCACACCCAGCCTTCAGGTTGGCTCTTATATCCCTCTGACAGGCTCTCATTCTTTTTTTTTATAAAATCAGCTTTACTGAAACATTCACATACTATGAAACTTACCCTTTTAAAGTATACAATTCAGTGATTTTTAGTATATTCACAGAGTTGTGCAGCCATTACCTCTATATAATTTTAGAACATTTTCATCACCCCAAAAAGAAACTCTCTACCCTTTAGCCATCACTCCCCATTTATTTCCTCCTCTCTGCAGCCCCTGACAACTACTGGTCTATTTGTAATGTTTTCAAGGTTCATCCATGTTGTAGCATGTGTCTGGTGACTGGCTTCCTTCACTTAGCATGTTTCAAGGTTCATCCTGTTGTAGCATGTGTCTGAACTTCATTCCTTATATTTTCCCAACCTCAGCCTTAGGGTCAACCATTTCTTCTCAGATTCCTGGTTCCTCTCATTGAAGGATGTGATTGCCTCTTTTTAATTCTGTCATTGTCTTCCTCCCCCATTTATTTATTTATGTCATTATGGACTCACGGATTGCTGCTTTTTTGTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGACTCACTGCAACCTCCACCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGCGTGCGCCATCCCTCCCGGCTAATTTTTTTTGTATTTTCAGTAGAGACGGGGTTTCACCAAGTTGACCAAGCTGGTATTGAACCACTGATCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACTACTGCACCCAGCCAGATTCCTGTTTTATTCACTGGGTTATAATCTGTTAAGATTATTTTGATGTTTTCATTGACCTAGATTTGGCCAGTGGGTGCCCCTTTAAGCTGGCTTGTATCTTTTCAAGTCCCCACCATTCTGTAAGCATTTCTTTACTTTCTGGTGCAAGTGTTCCAAGCTTTCCTTGTACCTTCCCTGCCCCAACCCTGGAATCAGCTATTTCTCCAAGGAGCCTGGGTTCCTTTTAGTGGAGCATGTGAGTTACAAGCTAAGGCCTGGGTGCTAGGTAAGCTCATTGCTACTGGGCATGGCTGGTCCCAGCCCTTCTCAATGGACACAGCTAGGAAGTATATATAAATAGACATACCTATGCAATGTCTACGTAGATAGATGTAGATAAACTTATATAAGGACACACACACATGTATACACATACACATATACACACATTTGAATCTATATTTCTCTGTCTATATATATTGAAACCCATGAGTTTCCACCAATGTCTCTAATTCCCATCTAGCACCACAGTGTTCCGTCTAGCCTTCTCCCTTTCCATAACTCCCTTCTGTGACAGTGAGAGCCCTCACTCCTATTATCCTTAACATGCTTCCTTTCTGGATAAGTCCTCGGTATGCAGCCAGTCTCCCACAGCCATTAGCTCTCCCATAGAGACACCCTCCTCAGCCTGCCACCGCCATTCCCTACCCACCACGGACACCCTCCTCCCCGCTACAAATGCCCTCCTTGTCCTGCTCAGCCTCTAATTTGCGTATTTTTAAGGTTTTTGATACATATCCCCAAATTTCCTTCCAGCAAGTTTAGCCCACATCATACTTCCACTCCTAATATACAAGTGTCTGTTTCCTGCTGTCTCACCAACAATGAGCATATTTTATTTTCCATGTTTGTCAATCTGAATTGGAGAAAAGTTGTTTTTCATTAATATGTGGCTCTTTTTTTTTTTTCTGATAACAAAGACCAGAAACTTTTTTTTTTTTGAGACAGCGTATTGCTCTGTCACCCAGGCTAAGTGCAGTAGAGGAATCATAGCTTATGAAAACCTGGAATTCCTGGGCTCTAAAATGTGGCTCTTAAAAACTAAAGTGAACCTGTGTCATTTGTTTGATGGTCATTCACAGTGCACTGCCTTCTAAATCTCCAATTCTGATTCTTGGCAATTACTTTTTCCATGCTAAGTAAATTCAACGTTTGGTTTCAAATCAATAGTCAACATTCGCCAGCTTAGTATAGGATGCCAGCAGCCATTTGTCGAGCATTAGCTGTGTATAAATGTAGGTTTGGGTGAATTGAAGAGACTTTTAGTGGACAGGCGCCCCCAGTTCTCACTTGGGCAGGGACATTTGAAGGCCCCAGGAACCTAGTCTCTTCCAGGCACTGATTTTTTTTCTCTGGCCCCTCCCAG
Seq C2 exon
GTCTACATCCGCACGCCTTCCGGTGAGGTGCAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAGCCACCTCTAACACCACCTGTAGCAGCCCTGCATCCCGTGCTCCCCATCTGAGTGGGACCAGCAAAAAGCACTCAGCTGCAATTCTCCGAAAAGAGCGTCCCCTGCCAAAGATTGCCCCAGCCGGGAGCATCATCAGCCTGAATGCAGCCCAGTTGGCGGCAGCTGCCCAGGCAATGCAGACCATCAACATCAATGGTGTCCAGGTCCAGGGCGTGCCTGTCACCATCACCAACACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167182-SP2:NM_003110:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.620 A=NA C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)