DreINT0154645 @ danRer10
Intron Retention
Gene
ENSDARG00000076763 | sp2
Description
sp2 transcription factor [Source:ZFIN;Acc:ZDB-GENE-080410-1]
Coordinates
chr11:12011012-12014269:-
Coord C1 exon
chr11:12014051-12014269
Coord A exon
chr11:12011298-12014050
Coord C2 exon
chr11:12011012-12011297
Length
2753 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
CATGTGCTCTGCTTTTCCAGGTG
3' ss Score
12.04
Exon sequences
Seq C1 exon
GCAGGAAATAATCTCCTGATCGTGCAGAATCCAGGGGGGAGTCAGCCTGCTGTGGTGCAGCAAGTGCAGTTGCTTCAGCAGAAATCAGACCAGCAGGTCGTTCAGATCCCCCCACAGGCTCTAAAAGTGGTACAGGCTGCATCTGCTACACTTCCCCCTGTCCCACAGAGACAGACAGTCACGCCCAGTGTCCAGGTGTCTCCTCCAGAACCCACACAG
Seq A exon
GTACTATTTACTTTATCTTTTCTTTTGAAGTTAAGCTGTGAATGTAAAGTTTCTTGTAATGTAGAGTATTGTTCATGTTCATTTTGGGATGAACTATCCCTTTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGGCTTGGGTGGTATTACGGTATTATGGTATACCGCGGGATCTAAAAATAGGAACGGTGTGAGTTTCAATACCGTTATACCGTCATAAAATATTGAATATCCTTTATTTAATGCCTACAAAAACGTATGTGTGGTTGTCATCACGGGACAGTGTGGAGGAGAGAGGGAGAGGGAGGGGGAGAGAGGGAGAGGGAGAGGGGGAGAGGGAGAGGTGACGTGACGAGTCGCGCTTCAAAGTGTCCTGCAGTTTGGCAGTATTTACGGTTTCTACTGAACAGAAGGGAGACGTGGTTAATATGAACGAGAGGTCTGCATTAGAGCTGAAGATCTTTGCCCGAACCCGACGAGACCCGAAAAAATCCAAATTCCTGTATTAAAATCCATCCCTGCCAAGGTGAAGCAAATGATGACGAAGTAGTAAAAAAAGCGAATTTTGTTGGCGGTCAAGTCAGTCACTAGTTCAGAGGGAGCGGTTATTCCAGCCGCAGGTATTTCGCGGTCGCTCATACACTGCGTATTACGGTAGAGCCTTAAAGCGCAAGCTGACAGGTAAAAAGACGAGGCCTCTCGCTACAATGAAACTACAGTCATGGAAAATTAAATGGATGTTCCTGACTGGTAGAAGATGAACAATCCTACCCAAAACTTGCAAAATCAGCCAGATCAGAACTCTGCATCTCGACCTGTAGCAGCAGGAAAGGGTGTTCAGCTGCTGGACCCCGTGAGCGCAGGACTGCGCTAAAGCCAGTGAATTTACTAATGTTCCTCCACAAACACACTTAGCCTAATCTTGGTGAGTAAAGGGTTTTTCAATTATAAATAAATATTAATCAAACCATATAATCATAATGTAGACCGAGTAGACAGGCTAATGGTGGCATTATTCTTTTAATATTCAGCTTCACTGCCGCCCTAATGCCAGATTGTGAAGAGAAGAAACAAACCTTGCAGAGCCTTTATCTTAATTTCGTTATTGCCAAAATACCCGTCATCATTTAGAGTTTATTTTAATTTGATTTGTTAAGCAAGATTTCTTTTGGTGTGTTGGCCAATTTAAAAGCTAAGTGTATGTACCCAGGCCTATATAGAGTGCTGAGATGTTACAATGTTACAGAGGACTTATTTTATTTCTTTGTTTATTCTTTCAAGTGGCATATAGTCTACGTTTGTTACGAATAAATGATGTTAAAACATATAAATGATGCAAAAAACAGAAATGTGCGCACATCTAGAAAAATCTTGAAGGCAGGTGCACGATCAAAAAACAAACATAAGTAGCAAAAGATTCAAAGTAGGTCGGCACACTGCCACTTTAGCTCTCAAAAAATTTTATTAGTCAAAATTACAAAAACACTACGTTTCGACCGACATGGTCTTCATCAGGTAAAGCGTTGCAAATGGAAGTCCTCCAGAAATAGACAAACAGCTCTACACAGCGCCTGCAGTCAATTATCACAATCAGCTAACAAGCTGGTAAACAGGAACAATTGCATACAATAATATACATCTTAAACAATGTGAAAAACATGAATACAATTACAAACAGACATTTAAAATACAAATACAAATTCTCACTATAGAATTCCTCGGAGACAGTATTCTATAGGCTAGATAGATATAGCACATCACACCTGCACAAAATCACATCACTCAAACAAAGCCAGTAGACCTAGGGGCAAAAAACATTATGTACATATTAAGTATACAACAATTCATTCATTCATTCTCTTGTCAGCTTAGACTTCAGACTTCCATTTGCAACGCTTTACCTGATGAAGACCATGTCGGTCGAAACGTAGTGTTTTTGTAATTTTGACTAATAAAATTTTTTGAGAGCTAAAGTGGCAGTGTGCCGACCTACTTTGAATCTTTTGCTAAAAACATATAAATGACTCATTCTTGAAAAAATGCATTAGAGCTGTGCATGAGCACATTTGAATAATGTCGGGCTGTAAACGAGTTCGGGCTTTATAAAGCTGTCAATCAAAATGTACCTGTCGGACTCGGGACCTATCGGGTATAATTTTTATGACCCGATTACAGCTCTCTGCATTCCCGCTGCAGTACCGTGGGAGCCGGCCAGATTTCTTACGGTGTGTTAATAAATTTCTGAATAAATCGCGGGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTTTGCGTAGCCTCTTTCTCTCTGACCGCGAGCCTAAGGTCGCATAGAAGGTATTCATTTTCTGAATGGTTTAGGCTTAAGCCAACAGTTTGGTGACGCTGTCTGAGCCTTGCGTCATAATTTTTTTTTATTACGCCGGTAATACCGGATACCGGGGTAAAATATAGAGGCGGTCTGACGGTATCAAAATTTGGATACCGCCCTAGCCTAATATACATATATATATATATATACCGATGTTTCCATTGGTAAAAAGTCCAGAGAGATCTTTAAGTATCTAATGCATGTGCTCTGCTTTTCCAG
Seq C2 exon
GTGCTGATTAAAACAGCCTCGGGGGAATGGCAGGCTGTACAGATACAGGAAACTACTGTTACGACTCCAACAACACCCACCAGCACACCAACACCTGCGGTGGTCACAAAAAAAGTTCAAACAGGAACGCGGAAAGAAAGGACTCTACCTAAAATCGCCCCGGCTGGAGGGGGTTTGATAACACTGAACGCAGCTCAGTTAGCATCTGCTGCTCAGGCTGTGCAGACCATCAACATCAACGGAGTCCAGGTACAGGGGGTTCCTGTGACCATCACCAATGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076763:ENSDART00000111919:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.531
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]