MmuINT1008339 @ mm10
Intron Retention
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71078474-71082053:+
Coord C1 exon
chr2:71078474-71078579
Coord A exon
chr2:71078580-71081910
Coord C2 exon
chr2:71081911-71082053
Length
3331 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TCTCTTGCTCATCCCTACAGACT
3' ss Score
9.37
Exon sequences
Seq C1 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGTCAGGGCGGGACTACTGGGACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATGTTAAAATCACAG
Seq A exon
GTATGGCTGCTATACAGTATCTTTTCTCCTTAAGAAAGTAAGTGCTCATATAAATAGTCATGCGCTGTAAGTGTCCTCGTTTTTCTCTGTGACTATGCACTGACTCATTTTACTTCCATACAGGAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACCTTATAAATACATATATATATATGTGTATATATATATATACATATATATATATATATATATACACACACACACACATAAAAATTATACATCATATATATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATGTATATATATTCCTTACTATTGAATGAAGGTCAGCAAAATTCTACCCATTCATTAAAGTGAAGACCTAAGGATGCTGAGCCGTTCTGGTCCTTGATTTTTTTGTCTGGAAAATGCTGAGTTACACTGATTTATACCTTCTTAACTTCCTTATAGCTTAGGGTTTGTTTGTTTGTTTTTTAATTTTGTTAAATCTGCTCATTTCTAAGGATAGTGTTTTCAAAGGAAATATTAATGTTATGCTAATTAAAGGTAGGCAGATCCTAGACCTCAGGAGAATAAAAAAGAAAGTTATACATGACTCTGTAAAGATAGAAAAAAACCTTTCTGTATTTAACTAACTTACTGAGCCAGATGTGGTAGCTCATCCCTAAATGCCAGCTCCTGAGAGGTAGAGGCAGGAGGACAGGAGTTCAAGGTCATCCTTGTCCACATAATGAGTTTGAGGCCAGCCTGAGCTACAACGGCCTCCCTCAAAAAAGGAAGGAAGGAAGGAAGGCAGGAACACTAACTAAACAAAATTCACTTATAATTTATAACCAACTTATAATTCAGCAAGTTAATAAAAAGCCAGAAATTGAAGGCTAGCCTGAGCTACGTGAGATCTTGTCCCAAAGGGGGAAAAAAAGCAAAATGATAATGTTCAAAAATGTAATTTATAAAATTATTTCCTGCTATAGAATAATATAATTGAATGATTTGGGAGGTCATCTGCCTAAGGGAATTAGCAAATTATAAGATGCTTGTGTGTCTGTTGCGCTCTGTGGAGACAGCAGACCTTTGAGTGTCTGTTGAACTCTGTGGAGATGGCTGCCCTCTGTCCTCATCTTCTCAGGCATCCAATGACAATTTGATGACTGCAGTGTGGTTAAAAGAGCCAGTTAGATATATTCCATTATCCTAGTAATTTTGTCTCTATTCCTAATTCATTAAGAGTTACTTCTTATGATGCTGAGAACATTTTCATCTATTTTTTTCAAGATTTATTTATTGTTATGTGTAAGTACAGTGTAGCTGTCTTCAGACACATCAGAAAAGGGTGTCAGATCTCATTAGTGATGGCTGTGAGCCACCATGTTGTTACTCAGATTTGAACTCATAACCTTCGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCACCTCACCAGCTCAAAGATTTATTTATTTTGTGTATATGCGTGTTCTATCTGCATGTACACCTGCATGCCAGAAGAGGGCATCAGATCTCATTTCAGGTGGTTGTGAGCCACCATGTGGTTGCTGAGATTTGAACTCAGGACCTCTGGAAGAGCAGTCATTGCTCTTACTCCCTGAGCCATCTCTCCAGCCCTTTCATCTGTTCCTAACCATTGAACTGAGCTTTTTTTTTTTTTTTCAGGTGAAACTCCAAAAGTTTTTCTAATGTAGCCAGAATAAACAGGATTTTTTTCTATCATCATTTAGCATTGCATAGTCAACAAAATAGGTTAGGAAAAAGAAGTGAAAGAAGCAAGAAAGGAAAAGAATGTTTAGTGACAAATGGCAATGATATAAGCTATGAAGAATGCCCAGTGTAACCAGTTAAGGTATCCACGAAGTCCAAGATCAATGTTTTAAAGCTGACTCATTTCTAAGTGAATTAGGCAGTTTTATGAAAAGCTAGCAATACCTCCTAATCTCAGAAATAACTCCTGTGTTCAGTATAAACATGCTCACATAGCTCTTTTAAGAATCTTGCCTGCTGTATGTAAGTCACTGTGTGCATGTATGGAGCTAGCAGAGGCCACAATAGGGTGCTGGATTCCCTGGAACTTGAGTTGTAGATAATTATGATGTAAGTGCTGGGAACTGAACATGAGTTTATTATTACATGGTGTTTGAATTTCTTTCATAATTTGCTGACACATGCCCTTTGACTTAATAGACTAGAATATTAATATTTTTATTACTTGAAAAGACCTTGTTTATTAAAGATATTTTCATTTTCTTAAACACTTTTTACGTACTTAAAAAGAACTTCAGTACTTTCTAAATACTTCTGTCTCCTCACAATTGTTTGTGAGCTACTTTTCAAGATCCATTTTCTCCTGTGTACAGCTCAGAAGGAAGAAGAGCATCCCCCAGTGCACATTTCCATTTCCTATGTCACTCTTGCATGATTAGTCTTCTCTGAGAGTAATACCTTTAAGACGAGTAGCTTTATAAACCAGAGGTGCTCAAGGTAGAAGCACAAATCAAGAGCCTATAGATGAGTTGTCTGTCTACAGACACGAAAGACATGGCAACCTCACTGTAGGGCCTCCTTACAGTGCTAGAGCAAACCTATTACACTATAATTAAGATTGAGAGCAAAAAGGACGAGAAGAAAGCACCAACAACAGACCCTTTGATGTCCATCCCCAAGACACTGATTGGATATGTCTGTAAACATCAACTTGTTTGATAATACTAGTGGTGGTGTCTACTCTCTACTAAGGTCTCCATTGTACCAGACCCCATCCTAATTGGCTGTATTCATTCAGACTAATGTTCCTTCTATACAAGAAATGTAACACAGGACAGCTTTTGTAAAATTTGCTGTTAGCCTATAATATGGAAGGTCTCTCTGCCTATAAAAATTTATTAGGCCTGATTAGCCGCTACAATTGTTCAAGGAGTTGACACTGTGGCTAACCCAGAGTCTTGTACGTAGATCCTCGGCGATGGGTGCACCTTTTGTTGTATATCTGCCTCCCTAACCCCCCCACAATAAGTACCTTCAGCCTCCTTTATTATTGTTGTTGTTGTTGTCTGCTCTCATGGAGGCCACACATTCCCACCAAAATATATGCCTAGAGATTTAGCTTATAGCCTCACTTTGTTTTCTACTGGCTTTCTGTTCTCTAGGCAGCAAATCTCTTTTCTGACTGCATTTTATTCACTCAAACAGTAATTTTTCATTCATGGAACTTTGTAAATTATGTATATGAACCAAGAAAGGTTGAACCTACTTAATGACGGGTGCAAGTCCAACCAGAATGAGAAGCTAATAAATTTCTCTTGCTCATCCCTACAG
Seq C2 exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCTCTGGAGAACGCATTCCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAGAAAGGAGTTTTTCATATTTGTGCCCTAAAAGATAATTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966:ENSMUST00000154704:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types