MmuINT1008851 @ mm10
Intron Retention
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28234245-28235817:+
Coord C1 exon
chr15:28234245-28234421
Coord A exon
chr15:28234422-28235703
Coord C2 exon
chr15:28235704-28235817
Length
1282 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
3' ss Seq
TTTTTCTGTGTCGTGCTTAGGTT
3' ss Score
12.74
Exon sequences
Seq C1 exon
ATCCTTGCTGAGAACAGTCAGCTACGGAAGGAAGCGGACGATGTGGGGCCCCGAGCAGAGCTGGAGCACTGGAAACAAAGGCTCTCCAGATTTAATTACCTCTTAGATCAGCTGAAAAGCCCCGACGTGAAGGCTGCGCTGGCATTGCTTGCTGCGGCCAAGTCCAAGCTTCTGAAG
Seq A exon
GTTCGTAGCCATTTTGCCACGATTCACAGTATGTGAATAAAAGAGTTCTCCATCCCCAACTCCACCGAGCAATTAGGGACAGAAAGGTGATATTTCACCAGTATGAAAATCTTTAAGACTGGGTAACGTTTGTCACATAACTTTGGATACTGGGAATTAGCCTTCAAGTTAAAGACATTTATTGGGTGTTATGCTTGTATGGTGAACATTGCGATTAGTGAGATATAATATGATCATATGACTATACAAGAACACATGCACACATGCAACTCTTTCAGACAATACAGATGCAGCAACTGTGAAGTTTTAAGTCCTCATGTATTTATACTGAAAAGCAAATTGCCACAAAACTCATCAGCTGAAAACAATATTTTTTTCTACCTCAGACCAGAAATCTTGGTGTAGTTGAACTAGCTGCTTTGGACTCTAGGGTCCCAGGAGGCTGCATCCGAGCGGTTGGCTTCTCTGCAGGTTCACACAGGAAGGGCTTGCTCCCAAGTTTGCTCATGGCATGACCGCTCTTGGTTCATCAGAGGCATCTTTCAGTTCTCACCACATGCTCCCCTCTACAGGCAGCTAGCAGATGGGGTACCAGGCTTCCTTTAAAGAGAGGTTCAGAATGTGTAAGAGGGTACCCAATCAAGAAGGCACATTACAAGCTAAGCCCAGGAGCGAAACATCGTTGCTTCTGTCATATCATTAGCAGCAAGTCACTAGTCATAAGCCATTCTTCTTATGTTATGTGCTTTAGAGTGACTGCATATTGTGATACAGGACAGCTCAGAATTGCTACCATTAGGAACTGCATAAAGCCAATTACGCATGCTATATCCCCCTTTGATATTTAGATATCTTTCCATTTAAATGTCTTGACAGATAGTTGGTAGCTAAAATAAATACTTGCTGTGTCACCAAATGGACACAAGTATGGGGCCATGGGGGAAGGAGAACTCAGGTAGGAATGGAGAGCATAAGGAAAATATGAGCATGAGACAGGAAGCTGGTCTGGTGGCCACACTGCAGGCAGCTGTGGTTTTGCAGGGCTGTGCTGCTCTCTGTTAGAATAGAGAATACAAAAGAAACCCAAAAATAAATTCCCTGAAACATTTAGTTAATTTTTTTTTGACTTGCTCTTCCACGTCCTTCTAAGACTCATTATTTTGATTGCAGGAGGCAGGAAGCAAATGGAGATGCTAAGGGGACCGGGGTGACGCTTAGTAGCTCTTATTTTGCAATCATCTGGGATAAGTGCGTGAACATTGTTTTTCTGTGTCGTGCTTAG
Seq C2 exon
GTTTGGAGAGATACAGACATTAGGATCACTGACGCAGCCAATGAAGCAAAAGACAATGTCAAGTATTTGTACACACTGGAGAAATGTTGTGACCCTCTGTACAGCAGTGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262:ENSMUST00000067048:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.4=100)
A:
NA
C2:
PF083857=DHC_N1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTGCTGAGAACAGTCAG
R:
GCTGTACAGAGGGTCACAACA
Band lengths:
282-1564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types