MmuINT1014680 @ mm10
Intron Retention
Gene
ENSMUSG00000109372 | Gm19410
Description
predicted gene, 19410 [Source:MGI Symbol;Acc:MGI:5011595]
Coordinates
chr8:35796167-35799389:+
Coord C1 exon
chr8:35796167-35796382
Coord A exon
chr8:35796383-35799150
Coord C2 exon
chr8:35799151-35799389
Length
2768 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CAAAGTGTTACCTTTCTCAGTCC
3' ss Score
4.04
Exon sequences
Seq C1 exon
GGGTCTTCCAGTGTCTGGATGGAAGCAGGTGCATAGAGGAGAGATATCACTGTGATGGGGCTCAGCATTGCTCTGATGGATCTGATGAGCTGGACTGCTGGAGACCCGCTGATGACTGCTCGATGCACTGTGACAACAAGACCCGCTGTATCCCTAAGAGTTGGAGATGTGATGGGAAGCCAGACTGTTTGGACAGAAGAGATGAACAAGGATGCT
Seq A exon
GTAAGTTCCATGAGCCTCCCAAGATGCGTGTATATACATGCAAGCATGTGAGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGATTCTGAGTTTCACTGTGTAGTCCTGGCTGACCTGGATTTAACACAGGTTCACCTGCCTCTCTCTGCCTTTTGGACTAAAGAGATGTGCCACCCCGCATGCTAACCCAGGATGTCTGGCCTGTGGGAATACTTCCAACTGTCTTATAGTTGATTCATCTTCTTTTTGAAAATTATGTTCTACAACAGTTCTCTAAATGATAACCTAAACATTTCCATTGAGCAGGTACTGAACCATTGTTCCTGAGGACAAAAATAAATAAATAAATTAGTTACTTCAAAGCTGTGATCACGGCACCCTTATCACTCCACCAATAAATACATCACTGCACTGTTTTTGTAACATTAATAAAGATGCTTTTATACTGTTGACTTATTAATGATCCTATATAATATGATAATTTGCTTAATAAGACCTACTACAGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTTTGAGACAGATTTTCACTATGTAGCCTGGGGTACATATCTAATATAACCATTTGCTTCATAAGACTTACCACAGCCTTTGTAGGGTGGTGGTAGTGATTACTTTTTGTTTTGAGACAGAGTTCACTATGTAGCCCTGGCTGGTCTGGAACATGCTCCAAAAACCAGATGGCCTTGCACTCACATAGATCCCCAGACCTCAGCCTTCAAAATGCCTGGGTCAAAGGTGTATGCCACCATGCCTGCTCCAGCTCTGTCTTGTTCTGGGAACACATGACAGCACTTTCACTGCTTTGAAGTTACTGCAATAGTAAAATCACCAAGAGTATGAAAATGTGAAAGTTATAGTTCTAAGTAGACCGTAACAGGATGCCAGATAAGAGAGTGAGAGTTAGCACAAAAGGCATATTTATGTCACCTGTTTATCCCAGCTGGGAAAACACACACACACACACACATGCACACATGCACACATACACACATACTATATACACATACCACACAAACACATACTACATACACATATAACACACATAGTACAGAAACACACACTACACACACTATACACACCACTACACACATATATGTACATACTACACACACACCCATACACACACTATTCAAACACACATATAACACACACTAAACAAGCACATACTACACACATACATACTCTATACACTACACACATTTACACAAAAACTACGCACACATACCCATATACAAAAACACTATACACATACACTCTACACACATATAACACACACTACACACAAATTCACAATACATATGCACACTATACACACTACACACACATTTAATATACATATACACATTATACACACACACTACACATACTACACATATTACATATACTACACTCACTACACACATACTACACACATTATACACATAACACATACTATACACACCCCCATACTACACACACTACACACACATACTACACATATTATATGAATAACACATAGATACACATAACACATACTACACACACCCCTATACTACACACACTACATACACTATACACATACACACTATACACACACTACACCCATATACCCATACACATACACTACACACACATAAAACACACTATACATATACACACACATACTCACACATACTACATACACATACACTATACACACTGTATACACTACACACACACACACACACACACACACACACACACACACAGTGCTGTATTTACCATGAGAGTTTGATGGTAAAGGGTTGGAGCTAGAGGCATCTTGAGTGTCCTACCATACTCTCCTCTTTCCATCACAAAAATATTTCCACTAGGGGAAAAATCTAGTCTATTTTGCAAAATTACTTTTTTGTCAAGCTAACTACTTTCCTGAATGTTTTACATTTGGTTTCGGGCCTTTTCACCTGCTGGGCCATCTCACTTGGGGGTCTTGTTACTTTTCCTTTTAATGTTATGGGCCACAGTCTTGATTTCTCTTTCTAATGTCATGATTCAAAGACCTATGCCACTTTGGGAGACTGCTGTCAAGAAGAAACTTGTGGGGATTAAAGTGGGAAGAGCTGGGTGGGACTCAGGCAGGTTTGGTTGTGTAATGAGCCGTGTAGTCGATGGCAGCTGTACCATTCGACCATTGGGAGGAATGAGATACTCAAAGGAAGGTGACTTCTAGATGGAAAGTACCTTGGAGACCTATTTACATTCCTCTCTGAGGCTAAATCAAACACCTGTCTATAGGCATTGAGTCCAATGACATGACATAAGTTATAGAACATTTTGGACGATGGGAGAGGATTTCTTTTATTGTTGATGCATGAAGCTTGGTGAGGAGGGCCTTCGCTCTGCCTGTGCAAGGTCTGTGTGTAAGTTCTCCCATCCTTGTCCCTCAGACCGTATTTTCTAGGACCAAGATGGAACTTGGTACATTAATAGCAAGTCCTAGTTAGAGTAACTTTTAATTCGAGTTTTCTTTCACTGCCTGATGAGCCTAGTCCCCACGGTGATATCAGAACTCAGGAGAGTCCCTGAAGTGATTTTCTTACTACTGGGTTGCCTCAGAGTTGCCTGAGCCTTTACCCAAAGTGTTACCTTTCTCAG
Seq C2 exon
TCCATGAAAAATGCAGCTCCCCTGAATTTCAATGTGAGAATGGCCAATGCATATCTTCTTCTCTGCGTTGTGATGGGGACCGAGACTGCCTGGACCATTCAGATGAGGAAGGCTGCCCTGTCGCCTGGTCCCTACAGTGCCCAGAAGGAGAGATGAAGTGCCCGAAGAGTGGAGAATGTGTGTTGGCAGAGTGGATATGTGACCATGATGTGGACTGCAAAGATGGAACCGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109372:ENSMUST00000207505:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(82.1=43.8),PF0005713=Ldl_recept_a=WD(100=47.9)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=PU(92.1=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types