RnoINT0002596 @ rn6
Intron Retention
Gene
ENSRNOG00000054809 | AABR07026032.1
Description
NA
Coordinates
chr16:60015058-60017573:-
Coord C1 exon
chr16:60017358-60017573
Coord A exon
chr16:60015297-60017357
Coord C2 exon
chr16:60015058-60015296
Length
2061 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CAAAGTGTTACCTTTCTCAGTTC
3' ss Score
4.34
Exon sequences
Seq C1 exon
GCGTCTTCCAGTGTCTGGATGGAAGCGGGTGCATAGAGGAGCGATATCACTGTGATGGGGCTGAGCATTGCTCCGATGGGTCTGATGAGTTGGGCTGCTGGAGGCCTGCTGATGACTGCTCACTGCGCTGTGACAACAAGACCCGCTGTATCCCTAAGAGTTGGAGATGTGATGGGAAGCCAGACTGTTTGGACAGAAGAGATGAACAAGGATGCC
Seq A exon
GTAAGTTCCACGAGCCTCTCAAGACGAAGATGTACGCATGTATGTGTGCGAGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTATCAAAAGCAGTGTTCTGAGTTTCACTGTATAGTCCTGCCTGACCTAGAATCCACAGAGGTCCTCTTGGACAAAAGAGACATGCTATTCTATGTGCTGACCCAGGACGTCTGGCCCTAGGAATACTTCCAACTGATTTATAGTTGATTTATCTTCCTTTTAGAAATTATGTTCTACAACAGTGCTCTGAATGATAACCAAAAAAATTACCATTGAGCAAGTACTGAACCATTGTTCTTGAGAACTAAATACACATATACATACATACATACACACACACATACATACATACTTTGAAGCTCTGATCAGGGCACCTTTACCATCCCACAAATAAATACATCACTAAACTGTTTTTGTAGCATTATTAAAGATGCCTCCATACTGTTGACTTATTAACAATCCTATATAATATAATAATTTGCTTAATAAGACCTACCACAGCCTTTGTGCGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGGTGGTGGTGGTGGTTTTTGTGTTTAAGACAGATTTTCCTATGTAGTCCTGGGTACACATGGTATAACCATTTGTTCATGAGATTTATCACAAACTTTGCAGTGTGGTGGTGGTGGTTACTTTTTGGTTTTGAGACAGAGTTCACTCTGTAGCCCTGGCTGTCTGGAACATGCTACAAACACCAGATGGCCTTGCACTCACATAGATCCAGTCTTGCCTTCGAAATGCCTACATTAAAGGTGTATGCCACCATCCCTTTGCCACAGCACGGTCTTGTTCTGGGGACATATGACAGCACTTTTATTGTGCTGAGGTTACTGGAATAGTAAATTCACCAAGAGTATAAGAATGTGAAAATTATAGTTCTAAGTAGACCACAACAAGAATGTCTGATAACAGAGTGAGGGTTGACACAAAGGGCTTAGTGTCACCTGTTTATCCCAGTTGGGAGCATGCATGCGTGCGTGCGCAGGCCCGCGCGCACGCACACACACACACACACACACACACATACACACACACACACACACACACACACAGTGCTATATTTACTATGGAAGTTTGATGGTAAAGGGTCAGAGCTAGAGGCAACTTGAGTGTCCTACCATATCCTCCTCTTCCCATCACAAGAATATTTCCATTAGGGGAAAGACTAGTCTAGTTTCCAAAATTACTTTTTTGTTACTACTTTAATGATCTACTTTCCTGAATGTTTTACATTTGGTCCCAGCCCTTTTTCACCTGCCGGGCCATCTTCTCACTTACGGGGGTCTTGATACTTTCCCCTTTAATGTTATGGGCTACGGAGTCTTGATTTCTCTTTCTAATGACATGGTTCAAAGACTTACATCACCTTGAGAGACTGCTGTCAAGGAGAAACTTGTAGGGATTAAAGTGGGAAGAGCAGGGTGGGGCTTAGGCGTGTTTGGCTGTGGAACAGACCGAGTAGGCAGGGCTGTGACAGCAGCTGGACAATGCAGAAGAACGAGATACTCAAAGGAACTTGAATTCTAGATGAAATGTACCTTTGAGACCTGTTCACATCCTTTCTGGGGCTAACCTTCTGTCTGTAGGCATCGAACCCAGCAGCATGGAAATTGTACTGGTGATTACAGTACACACCAAGGTGCATGCAAATGTTACAGAACATTTTGGATGTTGGGAGAGAATTTCTCTTATTGCTGATGCACCAAGCTTTGTGAGGAGGGTCTTCACTCTGCCCACGCCCAATCTGTATGTAGGTTCTCCCGTTCCTGTCCCTCAGCCTGAATTTTCTAGGACCAAGGCAGGACTGGGGCAGGTGATTTATACGTTTTAGAGTAACGTTTAACTGAGTTTTCTTTCCTGCCTGATGAGGCCGGTTCCCGCAGTGACAGCAGAACTCAAGAGAGTCCCCGGAGCGTTTTTCTTCTCACCAAGTTGCCTCAGAGTTGCCCGAGCCCTTACCCAAAGTGTTACCTTTCTCAG
Seq C2 exon
TTCATGAAAAATGCAGTTCCACTGAATTCCAATGTGAGAGCGGCCAGTGCGTGTCTTCTTCTCTGCATTGTGATGGGAACCGAGACTGCCTGGACCATTCAGATGAAGAAGGCTGCCCCGTTTCCTGGTCCCTACAGTGCCCAGAAGGGGAGATGAAGTGCCCGAAGAGTGGAGAGTGTGTGCTGGCAGAGTGGATATGTGACCATGATGTGGACTGTGAAGATGGAGCCGACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054809:ENSRNOT00000079224:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]