MmuINT1020845 @ mm10
Intron Retention
Gene
ENSMUSG00000084844 | Hoxb3os
Description
homeobox B3 and homeobox B2, opposite strand [Source:MGI Symbol;Acc:MGI:103211]
Coordinates
chr11:96343072-96346885:-
Coord C1 exon
chr11:96346827-96346885
Coord A exon
chr11:96343226-96346826
Coord C2 exon
chr11:96343072-96343225
Length
3601 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGTTTTCTTTTATTTCTCAGGGA
3' ss Score
10.68
Exon sequences
Seq C1 exon
ACTGAAAGGGAGAACAAAAAAAATCAAGATTTTGGGGAAATTACCCACAGAGATGCAAG
Seq A exon
GTAAGTTGATTGCTTGCTGATAGCCAAGCCATTAAGTGTTGAATGTGCTTCTCTGCCCTGCTTGCCTGTCTTGGCTCCCTCTACCCGACTCCACGTCACCTCTCCAATCTGAAATTCCCACTTGGTAGTGCTGGAACCCTGGGAACCCTGGGATTGATGTGGTCCCGTCTCCAACCTGCTGTGGATTCCTTTCCAAGGGTTGTTGGCAGACAGATGGAACCAGGCATGGAGGACTTAAAAGACAGCCCCTGGGGGCGGGGAGGGGGCCTGGGAGCTGGGAAGGCACCCCAGGCCTGTTCTGTTTCTGGAAACCTGGCGACAACCCCATCCCACACCTCTTTCAGGACTCTAAACCGCGCCCATCCCCCAAGTCCGCCGTCTCCCTGGCCCTTAACCTCACCCCTCCCTCCCCAGCCCGCCCCTCCCATCACAGGTGTGTCAGTTTGGGCGCTTCTTGGATTCTACCCTGAGGCGGTGCGTGGTGAGAGGAGAGGTCTGTGTACGTGGGGTGAGGGTCACAGGGTCCATGATGCTGGTTGGGGCCCATAGGGGCCGCCCCGTTGTAGTCCAGGTTCCCCGAGGGGTGGTGGGAAAGGTGATTGAGGCCGTAGAGGGAGGGGCCGGCAGGGGGCGGCAGCGGATCCGCGTAGCCACCCCCGCCCACATACACCGGACTGCCCTGCATGGTGGGCGTCCCGTAGGCGCCCCCGTTAGCTTGGAGGACGTGGGGCTCATACTCCGACGCCGGGGTCGGGGGGTACTTCTGTGGGGCGCCGCAACCCTTAAGAGGGGGCTGGTAGTTGGAAGGCAGCGCGTAGGCATTCTGGTGGCCTTTGCCGAAAGCTGGTGGGGACGGGCTGTCGTAGCTGGGGGTCATGGAGTGTAAGGCGTTCATGAAGCCGGCCGTGGACTGCATGGGCTGCGGGGGGCTTCCGGCCGGAGAGGGACCCCCAGAGGACGAGGCCAGCCCCTTGGCCTTCTGGTCTTTCTTGTACTTCATGCGACGGTTCTGGAACCAGATCTTGATCTGGCGCTCGCTGAGGTTCAGCAGATTGGCCATCTCGACCCGGCGCGGCCGGCACAAATAACGGTTGAAGTGGAACTCCTTCTCCAGCTCCACCAGCTGCGCGCTTGTGTACGCCGTGCGCGCCCGCTTGGACGCGGCCGACCCCGGGGGGCTCTTGTCCCCTCCCCCGCCGCCGCCGCCGCCCCCGCCGCTGCTGCCGCCGCCACCGCCGCCGCCGCCGCCACCACCGCCGCCGCCACCACCACAACCTTCTGCTGGACCCGAGGGGGGAGGGGTGGGAAGGGGAGAAAATGAAATAAAAGATAATTACTGAACACGCCGAAATTGAATGCATCGTTTCTTAATAAATCCAGGCCTGGACTCGGAGGCCCCGCTGCCCTCCCCTTCGCGTCCCCACCTCCTCTACACCACCACCCCCCCCCTTCCTACCTCCCGTCGCATTAGCGGACACTCTATAATAGTGGCATTTATTAAGAGACCTGTTCTCCTTTCACGGCCCCAGCTTATGAAAATTTGATCATGTCAAACAGACAGAGCTGCGTGGCCATTTATTTAGGGCTAGGATTTTGCGTGTGCGCGCACCCTCCCCGTATATCCAAATCCAAGTCTGAGGTGATTCCTCCCTTCTGTCCGCCCTCTTTACAAGACAAGTGACTGAGAACACCTTGGGAGGGGGGCGGGGGGGGGGAGACTGGACACTGGTGGGCAGGGCCTGGATGTGTGGCACATAGAGGCTCGGGTGGCTGCAGGCCGGGACCCCAGGCTGCCTGAGCGATGGTGATTAATACCTACAATAATCATACTTAATAATAATCTATCCTTGATGACTCTGTGCCTCCAGGCGGTGCGGCCTTGGGAAGGGCTGTAAAGCCAACCATCCCACCTCCTGGAAACTCTTGGAAGCCCAGATGGAGGATGGTTGGATGGACTGGGTGTTGGTCAGGTCAGAGGTCATCAGGTAGTGAGAGGTAGCTAAAAAGCACTAGGCAGCCATCTAATATTGTCTCCAGGCCGCCTTGTGGGCGCCTTGGGGTCGGATGCTATAATAACAGTGAAATTCCTGGGTTGGACAAAAGCTGACTAGGAAGGCAGAGAGCTGGTACCTGTGCCGGGGGAGCTGTTTTTCAGCTTGGACGTTTGCCTCGACTCTTTCATCCAGGGGAATATCTGTTTGGTGAGGGTGGAGTTGGAGCCGGCACCGCACTTGGGGGGGCCGCTTTTGCTGGGCCCACCCCCGTTATTGCTGTTGCTAGTGGTACTGGTAGGTGCGGCGCTGGGTGGGGGTGAGCCCGGAGGTGCGGGCAGGGGCTCTGGGGCCAGGCCTGGCCTCATGCAGCTGCCATTGAGCTCCTTGCTCTTGGCATGTGGGGCGGCGTTGCCCAGGGACTGCAGAGAACACGCTGAGCGCTGGTAGTCACCCTCCAGGTGCGTGGCGGCCTGAAAGGGGGGCTGGGGAGGCCCGTCGTAGCCGAAACCATTGCTGCCAGGGTACGAGGAGTAGCCTCCGAAGAGCGCAGCTGCGGTGTTGTCGTAGTAGGTGGCTTTCTGCATCGCTGGGCGAGGCCCGGGCAGTGGGTGGCAACTTGCAAGGGCCTGATACCCTCACGACCGGACATTGGCACCCCTGGGGGTCACGTGACACGCCGGACCCCCCTCCCCTTTCTGCCCCCCTCCTCTCGGGTCTGTTCCAAGCGGCTGACCTGCGGGGCGAGAGAAGAGACAGAGGGGAGAAGAGGACTGGGCCTCGAATCCATCTTAGGAACTAAAAAGGGAACTGACATCAATAGTTTTTTTTTTTTCTTCTTCTCCCCTCGCCAGTATCTCTGCAGCAGACGCTGAGACCAAGTATCTAACCTGACTTGGATGCTTCACACTTCAACTTTAATTTTAACGGGAAAAAGAAAACATCCATTTTCATTTCCATTTTTTTTTAAAACAAAATCAAGACTGTACTCCTTCGAGGACCGCTTAGGAATAGAACACCACTGCTTCGTGGACCATTGCCCCTCTCTCTGGCACCCCGAAATAACCAACCCCTGGCCTCTTCTACAATTTTTCCTTAACCTCCCCCACCCCCGCAACTCCCCAACCCTGGGATGGGGCAATCCCAGGGAGAGGGCACTATTAGACTCTAAAGTAGAAGCATCCCAGAGGTCCTCCTTCCCTTAGGGAGGCCTCTCTGCTTCCAGTCTTTCTTCCTTCCATATCTTTCCACCTAAGCAAAGTCTAGCCTGGAACTTGCAGATCTTAGACCCAAGCCAGAATGAAAAGCAAATTCATCTGGGACTCTTCCCTCCAAGATCATAGCAGCCTAAGGCAGAAAACTCCTGAAGATTTTTAACCCCAGAGGCAGTGGAACCAAGTTCCATCCATCTATGTCCCATCTGAAGGTACCATCACCTCCAGTCTTGACTCAGGCAGGCCTGGGACCTAGCAGCCAGAGGCCCCTGTGGAGCGTCCAAATGGACCATGCTTGTTTAGATTTCCCAGGCAAGACCAGTTGGTGCTATGACCATTTGGCTTGGGTTTTCCCCACCCCCAATCCATAACAATCTGTTTTCTTTTATTTCTCAG
Seq C2 exon
GGAAAAAGAAAAAGGAAAAGGAAAAACTGTGCATCTGCTGGAATCTCTTTTCTACTGAGATGGGGGAAATTATCCAGGATGAGAAAGACTCACAAAACAATTTGAACACTATTCTTCTCTGGATTCAAAGGGGAGGCTGTTTACTGAGGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084844:ENSMUST00000147410:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types