MmuEX7034441 @ mm10
Exon Skipping
Gene
ENSMUSG00000048763 | Hoxb3
Description
homeobox B3 [Source:MGI Symbol;Acc:MGI:96184]
Coordinates
chr11:96341064-96347930:+
Coord C1 exon
chr11:96341064-96341151
Coord A exon
chr11:96344100-96344696
Coord C2 exon
chr11:96345546-96347930
Length
597 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTCTCGCCCCGCAGGTC
3' ss Score
14
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGGGGAGATTTCTCGCCTGCCGCTCGCGCTGGGGCTCGATGTGAATATATATTATGTCTGCCTGTTCTCCCCTCGTCGGTGGCTAAG
Seq A exon
GTCAGCCGCTTGGAACAGACCCGAGAGGAGGGGGGCAGAAAGGGGAGGGGGGTCCGGCGTGTCACGTGACCCCCAGGGGTGCCAATGTCCGGTCGTGAGGGTATCAGGCCCTTGCAAGTTGCCACCCACTGCCCGGGCCTCGCCCAGCGATGCAGAAAGCCACCTACTACGACAACACCGCAGCTGCGCTCTTCGGAGGCTACTCCTCGTACCCTGGCAGCAATGGTTTCGGCTACGACGGGCCTCCCCAGCCCCCCTTTCAGGCCGCCACGCACCTGGAGGGTGACTACCAGCGCTCAGCGTGTTCTCTGCAGTCCCTGGGCAACGCCGCCCCACATGCCAAGAGCAAGGAGCTCAATGGCAGCTGCATGAGGCCAGGCCTGGCCCCAGAGCCCCTGCCCGCACCTCCGGGCTCACCCCCACCCAGCGCCGCACCTACCAGTACCACTAGCAACAGCAATAACGGGGGTGGGCCCAGCAAAAGCGGCCCCCCCAAGTGCGGTGCCGGCTCCAACTCCACCCTCACCAAACAGATATTCCCCTGGATGAAAGAGTCGAGGCAAACGTCCAAGCTGAAAAACAGCTCCCCCGGCACAG
Seq C2 exon
CAGAAGGTTGTGGTGGTGGCGGCGGCGGTGGTGGCGGCGGCGGCGGCGGTGGCGGCGGCAGCAGCGGCGGGGGCGGCGGCGGCGGCGGGGGAGGGGACAAGAGCCCCCCGGGGTCGGCCGCGTCCAAGCGGGCGCGCACGGCGTACACAAGCGCGCAGCTGGTGGAGCTGGAGAAGGAGTTCCACTTCAACCGTTATTTGTGCCGGCCGCGCCGGGTCGAGATGGCCAATCTGCTGAACCTCAGCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGTCGCATGAAGTACAAGAAAGACCAGAAGGCCAAGGGGCTGGCCTCGTCCTCTGGGGGTCCCTCTCCGGCCGGAAGCCCCCCGCAGCCCATGCAGTCCACGGCCGGCTTCATGAACGCCTTACACTCCATGACCCCCAGCTACGACAGCCCGTCCCCACCAGCTTTCGGCAAAGGCCACCAGAATGCCTACGCGCTGCCTTCCAACTACCAGCCCCCTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048763-'1-8,'1-7,12-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.840 C2=0.856
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=20.0),PF132931=DUF4074=WD(100=22.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTGCCTGTTCTCCCCTC
R:
CCCTTGGCCTTCTGGTCTTTC
Band lengths:
347-944
Functional annotations
There are 1 annotated functions for this event
PMID: 8600458
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000757; ELM sequence: FPWM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types