GgaEX1029036 @ galGal4
Exon Skipping
Gene
ENSGALG00000013455 | HOXB3
Description
homeobox protein Hox-B3 [Source:RefSeq peptide;Acc:NP_990074]
Coordinates
chr27:3626323-3649970:+
Coord C1 exon
chr27:3626323-3626423
Coord A exon
chr27:3644466-3645019
Coord C2 exon
chr27:3646069-3649970
Length
554 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCCTAACCTTTCAGGTC
3' ss Score
11.79
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
CCCAAGCCCCCCCTCCCCCAGACCTCTCACTTTGGAAGAAACCACCCAAACCATGAGGGCCGTCTCTGGGGCGTTGGAAAAAGGATGTGGGAGCGAACCAG
Seq A exon
GTCAGCTTCCAATAGACAGCTGGAAACGGCCTGTCACGTGGCCTTGGGGTGCCAATGTTCTGCCATAGGGGTGTCAAGACCCTGGTAGCTGGAAAAATCATTTTGGGGAATCCTGGAGATGCAGAAGACAACGTACTACGAAAGCTCCACGCTCTTTGGGGGCTATTCCTATGGGAGCACCAATGGGTTTGGCTACGAGGGTCCCCAGCAGCCCTTCCAACCGGGTTCCCACGTGGAGAACGACTTCCAGAGGTCCGCCTGCTCCCTCCAGTCTCTCGGCAACACAACTCAGCACGCAAAAAGTAAAGACCTGAATGGGAGCTGTATGAGGCCGAGTTTGCCCCAGGAGCACCATCCGCCTCCGACTGTCTCACCACCCCCAAACCCCACCACCAACAGCACCAGTAGCAACAGCAATAACCAGTCAGGGAGCAGCAAAAGTGCCCCGAGTAAAGCCAACCTCAGTGCAAACGCCAGTCTCACCAAGCAGATTTTCCCCTGGATGAAAGAATCGAGGCAAAACTCGAAACAGAAAAGCAGCTCCCCTAGCACAG
Seq C2 exon
AAACCTGCAGCGGCGAGAAAAGCCCTCCAGGCTCCTCGGCCTCCAAGAGAGCCCGCACAGCTTACACCAGCGCGCAGCTGGTGGAGCTGGAGAAGGAATTCCACTTCAACCGCTACCTGTGCCGGCCCCGGCGCGTGGAGATGGCCAACCTGCTGAACCTCAGCGAGAGGCAGATCAAGATCTGGTTCCAGAACAGGAGGATGAAGTATAAGAAAGATCAGAAGTCAAAAGGGATGGGCTCTTCCTCTGGAGGGCCTTCCCCCACCGGCAGCCCCCCCCAACCCATGCAATCCTCCGCCGGGTTTATGAACGCCTTGCACACCATGAGCAGTAACTATGATGCCCCCTCCCCACCTTCCTTCAATAAGCCCCACCAAAATGCCTACGCCATGTCAACTAACTACCAAAACCCCATCAAAGGCTGCCCCTCCCAACAGAAGTACACCAACACGGCCCCCGAGTACGACCCCCATGTATTACAAGGGAACGGGGTGGCCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013455-'0-5,'0-1,7-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.903 C2=0.827
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=WD(100=22.4),PF132931=DUF4074=WD(100=25.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGATGTGGGAGCGAACC
R:
TGGTGTGCAAGGCGTTCATAA
Band lengths:
347-901
Functional annotations
There are 1 annotated functions for this event
PMID: 8600458
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000757; ELM sequence: FPWM; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]