MmuINT1022400 @ mm10
Intron Retention
Gene
ENSMUSG00000033707 | Lrrc24
Description
leucine rich repeat containing 24 [Source:MGI Symbol;Acc:MGI:3605040]
Coordinates
chr15:76719796-76722173:-
Coord C1 exon
chr15:76722126-76722173
Coord A exon
chr15:76719925-76722125
Coord C2 exon
chr15:76719796-76719924
Length
2201 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCTGGACTTTGCTACCCAGGCA
3' ss Score
5.24
Exon sequences
Seq C1 exon
AGTCTTGCAGCCGCAAGCACCGCGGGGAGTCGCTCGCCACTGGAGCAG
Seq A exon
GTGAGGGGGTGGGGGGAGATCCTGGCCCAAGGTCACCGGGCTTGGGGGCGGGATCGGGACCCTCTAGGTTCTGACTGCCTCACCGAGAAAAGGTCATAGGATCTGGCAGTGGGAAGGGGATGGAAACCACACCCTCAATGAGCAGGCTCGGACCCACTGGAACGGGAGGGGGCGGTTAGGGGAGGTAGTGCTGCTTAAAAGCGCCGGATCGCAGGGGCTGCCAGAGACCTCCGCTGGGCCCGACAGAGGACACAGGACTCCTCCCCACCCTCTTCCCGCCTAGATAGGCATCCAAGAGACCGACACCCCACTCCTGCTCAGGATTAGAGGTTCATGTCCTGATAAAAGGATCTCTGCTGGGCTCATCTAATAAGGGGCCCTTATTCCTGACATGGCTGTCTTGCTCTGGTGCACATCTGGGCCTCTGCATAAGCAGCAGCTCTGATCCCTAATGCACAGATCAAGGCTTTGCTACTGAAGGCTGAACAGCTGTGCAAGGCCTGGAGCCAGGGACCAACCAGTCATTCGTGTTCCAGGAAATAAAACCCAGAAACCTAGCAAGCGTCCCCACTTCTTGGGGCTCCACATGTCCTGAGATCTAGGAACTGCCTTTGCCTGCGCCAAAGCTATTCCATTAAAACTTTACTGCTGTGCTGCCTCATCTCTATTGACTTTAAATGATCATGTGACTTACAATTGGTGCAAAATTGAGACAAACACCAAGGCCACTTAGTACAATTCAACTTGACTCAGAGCAAAGAAGACCTGGTGAATCGGCGAGTATTAAAACACTAGACCATGCCAAATGAGGCTGGAGACTAGAGAACAGTGCACCCTTGGTCCTATCTTCCTTAAGGCTTCTCAGCTTCGGGCATCACCATTAAAACTGAGCTCATCGTGGCTAGAACTAGACCCCAGTCCTCCTGTCTCTAGGTACCCAGGGACATGCAGTAACCTGTAGAGTGCATTTCTTGACAGTTTCAGAGGTCACTGCTCCCACATTCTTAGAAAGCTAGGTACCCAGTTGCGGTGATAGGAGTGGAACTCAGTGTATTGTGTGCTTAAAGCCTGTGACTGGTGTGCGGGAGAGACTGAGGCCAATCCCCAGAGGGAGGAAAGAAGAAAGTTAGAAACCAGCGGATGACCTGAGGTTTTTCCCCACATCCCAGCCAGATGTGACACATACCTTCCTCTACTCCAAAGACACAGCCCCCGCTTCGAACCAGCTGTGGGGCCAAGGCATGATTTTCCTGTTGTTTGTCTTATCCCTCTGTTCTCTAAAATCACCCGGGAAAGCCAGGTGTGGTGGTGCAACCCTGTGATCTCGCCACTTGGAAGCATGATTAGAGGATCTCCAGTCCAAGTATAGCAAGACCCTGGCTCAAAACAATTAGAAGTAACAGTCAGGTATGGAGGCCCAGGTCTTTAATCTGTACTAAAGAGGCAGGGGCAGGTGGATCTCTGAGTTCAAGGCCAGCCTGTTTTACTAGAGTTTCAGGACAGTCATGGACACAGAGAAAGAGAACCTGTCTTAGTGGGGGTAGGGCTGGGTGTGAATTCCCAGCACCCAAGTGATGGCTCACCACAACCATCCTAACTTCAGTTCCAGGGGATCTAATGCCTTCTTTTGACTCTTGGGGGTCCCAGGTAGGCATGAGATGCACACACATATATGAAAAGCAGAATATTCATTCGTGGATTTTAAAAATAAAAGGAAAGAAAAAGCTAGAAATAAGCTAGGCATAGTGACATAGGCCTTTAATCTCAGCACTTGGAGGCAGACAGACATCTCTGGGTTTGAAGCCATCCACATAAGGAGTTCCAGGCCAACCGGAGATACACAGTAGACCTTGTCTAAAAGAAAATAAAACATAGGAGTTAGCCCTGAGGAAAAGCCTAACTCTTGGTGAGCTTCCTACCAACCACTATCCCTACAACAGGAGGATCATAGACCACACCAAGCTATGCCATGACCACCACATCCCCCTCAGATCATGACAAATGAACCATACGGTGGGATTATATGGATCAAGTTCATGTGGGGTCCCTTGCTCTTGTGTTGAGGCACAAAGAAGTTTCTGCCCAGTGCTGAACTTTATGCTGATGCCAGTGCCCACAGAATGAGACCAAGGGGGTGTGTCTGCCCGGGGCACTCTCTTTTGGTCCATACCTGGATAATTGCCCTGGACTTTGCTACCCAG
Seq C2 exon
GCAGTTACATCTGTTACATCTGGGAACCAAGGAGAGCCCAATGGAGGCTGCCGTGCCAGTGATGGGACTGTCGTGCCAGTGACGAGCAGGAGGCTCTCAGTATAGGCACAGGAAGAGGCCTAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033707:ENSMUST00000049956:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types